Factsheet for Bra028351.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003829.1-P
Bra012201.1-P
Bra015965.1-P
Bra016482.1-P
Bra017533.1-P	nucleus
Bra018303.1-P
Bra021652.1-P
Bra022808.1-P
Bra024404.1-P	nucleus
Bra025007.1-P	nucleus
Bra025069.1-P
Bra025158.1-P
Bra026510.1-P
Bra027006.1-P
Bra031852.1-P	nucleus
Bra036240.1-P
Bra036636.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	Bra012201.1-P	AT1G19980.1	21798944
AT3G24140.1	Bra016482.1-P	AT1G19980.1	21798944
AT3G24140.1	Bra027006.1-P	AT1G62990.1	21798944
AT3G24140.1	Bra036636.1-P	AT1G62990.1	21798944
AT3G24140.1	Bra003829.1-P	AT1G73790.1	21798944
AT3G24140.1	Bra015965.1-P	AT1G73790.1	21798944
AT3G24140.1	Bra018303.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra021652.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra022808.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra025158.1-P	AT3G25710.1	21798944
AT3G24140.1	Bra026510.1-P	AT3G25710.1	21798944
AT3G24140.1	Bra036240.1-P	AT4G02770.1	21798944
AT3G24140.1	Bra025069.1-P	AT5G45600.1	21798944
AT3G24140.1	Bra017533.1-P	AT5G46690.1	17088607
AT3G24140.1	Bra025007.1-P	AT5G46690.1	17088607
AT3G24140.1	Bra017533.1-P	AT5G46690.1	21798944
AT3G24140.1	Bra025007.1-P	AT5G46690.1	21798944
AT3G24140.1	Bra024404.1-P	AT5G65640.1	17088607
AT3G24140.1	Bra031852.1-P	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18083	Canola	nucleus	100.0	93.75
CDY64587	Canola	nucleus	93.33	90.57
AT3G24140.1	Thale cress	nucleus	75.56	65.7
Bra001929.1-P	Field mustard	nucleus	73.33	65.19
Bra028357.1-P	Field mustard	nucleus	71.39	64.25
GSMUA_Achr8P28400_001	Banana	nucleus	30.83	55.78
GSMUA_Achr2P06030_001	Banana	nucleus	43.89	49.53
VIT_05s0029g00050.t01	Wine grape	nucleus	51.67	46.85
Solyc05g053660.1.1	Tomato	nucleus	49.17	46.21
PGSC0003DMT400040761	Potato	nucleus	50.0	46.15
KRH75571	Soybean	nucleus	51.94	43.59
KRH71094	Soybean	nucleus	51.94	41.93
Os05t0586300-00	Rice	nucleus	44.44	41.34
TraesCS1B01G300100.1	Wheat	nucleus	43.33	37.41
TraesCS1A01G290800.1	Wheat	nucleus	43.33	37.14
TraesCS1D01G289400.1	Wheat	nucleus	43.06	36.99
Bra020775.1-P	Field mustard	nucleus	20.28	36.32
Bra040234.1-P	Field mustard	nucleus	20.28	36.32
Zm00001d009715_P001	Maize	nucleus	41.94	36.12
Bra001183.1-P	Field mustard	nucleus	20.56	35.75
HORVU1Hr1G071330.3	Barley	nucleus	43.06	35.55
Bra040856.1-P	Field mustard	nucleus	21.39	35.48
KXG22636	Sorghum	nucleus	43.89	34.57
Bra025007.1-P	Field mustard	nucleus	22.78	29.93
Bra029088.1-P	Field mustard	nucleus	26.94	28.87
Bra016377.1-P	Field mustard	nucleus	23.33	27.81
Bra017533.1-P	Field mustard	nucleus	22.22	27.68
Bra012329.1-P	Field mustard	nucleus	22.5	26.73
Bra022638.1-P	Field mustard	nucleus	25.56	26.29
Bra027958.1-P	Field mustard	nucleus	21.11	26.03
Bra016080.1-P	Field mustard	nucleus	23.33	25.85
Bra037414.1-P	Field mustard	nucleus	22.22	25.72
Bra003886.1-P	Field mustard	nucleus	23.06	25.62
Bra004505.1-P	Field mustard	nucleus	19.17	25.46
Bra008017.1-P	Field mustard	nucleus	23.06	25.46
Bra007644.1-P	Field mustard	nucleus	18.89	24.37
Bra040483.1-P	Field mustard	nucleus	20.0	22.64
Bra003073.1-P	Field mustard	nucleus	26.94	22.4
Bra031865.1-P	Field mustard	nucleus	13.06	21.56

Protein Annotations

EnsemblPlants:Bra028351.1	EnsemblPlants:Bra028351.1-P	EnsemblPlantsGene:Bra028351	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025437C5	UniProt:M4EHT6	MapMan:15.5.32	:	:

Description

AT3G24140 (E=1e-127) FMA | FMA (FAMA); DNA binding / transcription activator/ transcription factor

Coordinates

chrA01:+:18313940..18315104

Molecular Weight (calculated)

40954.6 Da

IEP (calculated)

8.093

GRAVY (calculated)

-0.490

Length

360 amino acids

Sequence
(BLAST)

001: MIDYTLNGDL QPQKQPMLQQ QPHQLSPSEF GATPFFDKKI FIDIMHFADF GPKLALNRTN NQAVHETGFD PVCFLKFPVL KERIEDHIRT QHLMSSHRTP
101: QEGGECGGNI GCVFLEDQDN NSRRLRFIRG GENEDRDNDN VTTKEVNSKR KRGRTSKTIE EVESQRMTRI MVERKRRKQM NEHLRVLRSL MPGSYVKRGD
201: QASIIGGVIE FVRELEELLP CLESQKRRRI LEETGHRQTG DMTRPTNPSS CPVTRVANQT QPLIITKNIT ELEGGGGLLE EMTENKSCLA DVEVKLLGFD
301: AMIKILSKRR PGQLLMTMAA LEDLHLSILH TSITTMEQTV LYSFIVKASS TCLHIILIGV

Best Arabidopsis Sequence Match ( AT3G24140.1 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.