Factsheet for Zm00001d009715_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002492_P001	nucleus
Zm00001d005740_P001
Zm00001d012933_P001
Zm00001d013039_P001
Zm00001d017677_P001	nucleus
Zm00001d026046_P001	nucleus
Zm00001d027431_P002
Zm00001d027546_P001	nucleus
Zm00001d028504_P001
Zm00001d032213_P001
Zm00001d034543_P001
Zm00001d034680_P001
Zm00001d039489_P002
Zm00001d047878_P001
Zm00001d048471_P001
Zm00001d050394_P001
Zm00001d051509_P001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	Zm00001d039489_P002	AT1G19980.1	21798944
AT3G24140.1	Zm00001d027431_P002	AT1G62990.1	21798944
AT3G24140.1	Zm00001d048471_P001	AT1G62990.1	21798944
AT3G24140.1	Zm00001d012933_P001	AT1G73790.1	21798944
AT3G24140.1	Zm00001d034680_P001	AT1G73790.1	21798944
AT3G24140.1	Zm00001d005740_P001	AT3G25710.1	21798944
AT3G24140.1	Zm00001d028504_P001	AT3G25710.1	21798944
AT3G24140.1	Zm00001d032213_P001	AT3G25710.1	21798944
AT3G24140.1	Zm00001d047878_P001	AT3G25710.1	21798944
AT3G24140.1	Zm00001d050394_P001	AT3G25710.1	21798944
AT3G24140.1	Zm00001d013039_P001	AT4G02770.1	21798944
AT3G24140.1	Zm00001d034543_P001	AT4G02770.1	21798944
AT3G24140.1	Zm00001d002492_P001	AT5G46690.1	17088607
AT3G24140.1	Zm00001d017677_P001	AT5G46690.1	17088607
AT3G24140.1	Zm00001d026046_P001	AT5G46690.1	17088607
AT3G24140.1	Zm00001d051509_P001	AT5G46690.1	17088607
AT3G24140.1	Zm00001d002492_P001	AT5G46690.1	21798944
AT3G24140.1	Zm00001d017677_P001	AT5G46690.1	21798944
AT3G24140.1	Zm00001d026046_P001	AT5G46690.1	21798944
AT3G24140.1	Zm00001d051509_P001	AT5G46690.1	21798944
AT3G24140.1	Zm00001d027546_P001	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22636	Sorghum	nucleus	83.01	75.93
Os05t0586300-00	Rice	nucleus	65.79	71.06
GSMUA_Achr8P28400_001	Banana	nucleus	31.82	66.83
TraesCS1B01G300100.1	Wheat	nucleus	63.88	64.03
TraesCS1D01G289400.1	Wheat	nucleus	64.11	63.96
TraesCS1A01G290800.1	Wheat	nucleus	63.88	63.57
GSMUA_Achr2P06030_001	Banana	nucleus	47.61	62.38
HORVU1Hr1G071330.3	Barley	nucleus	63.64	61.01
Solyc09g091760.1.1	Tomato	nucleus	32.3	54.66
VIT_05s0029g00050.t01	Wine grape	nucleus	51.2	53.9
Solyc05g053660.1.1	Tomato	nucleus	46.89	51.17
PGSC0003DMT400040761	Potato	nucleus	46.65	50.0
PGSC0003DMT400076223	Potato	nucleus	33.25	48.77
KRH75571	Soybean	nucleus	49.76	48.48
Bra028357.1-P	Field mustard	nucleus	45.45	47.5
Bra001929.1-P	Field mustard	nucleus	45.69	47.16
CDX92996	Canola	nucleus	45.69	47.16
KRH71094	Soybean	nucleus	50.0	46.86
AT3G24140.1	Thale cress	nucleus	46.17	46.62
CDX94841	Canola	nucleus	45.45	46.57
CDX85167	Canola	nucleus	42.82	46.02
CDX77460	Canola	nucleus	37.56	44.1
Bra028351.1-P	Field mustard	nucleus	36.12	41.94
CDY18083	Canola	nucleus	37.32	40.62
CDY64587	Canola	nucleus	35.89	40.43
Zm00001d009778_P001	Maize	nucleus	21.05	40.18
Zm00001d031260_P001	Maize	nucleus	19.38	37.5
Zm00001d051509_P001	Maize	nucleus	24.16	30.42
Zm00001d027987_P001	Maize	nucleus	23.92	30.21
Zm00001d020790_P001	Maize	nucleus	23.45	29.52
Zm00001d052192_P001	Maize	nucleus	23.68	28.7
Zm00001d005939_P001	Maize	nucleus	22.73	28.53
Zm00001d048229_P001	Maize	nucleus	24.16	28.29
Zm00001d026046_P001	Maize	nucleus	22.49	27.98
Zm00001d018119_P001	Maize	nucleus	23.45	27.84
Zm00001d017677_P001	Maize	nucleus	23.45	26.78
Zm00001d027419_P001	Maize	nucleus	19.62	26.37
Zm00001d002492_P001	Maize	mitochondrion	11.0	26.14
Zm00001d048478_P001	Maize	nucleus	18.42	23.77
Zm00001d053391_P001	Maize	cytosol, nucleus, plastid	21.29	23.73
Zm00001d046096_P001	Maize	nucleus	18.9	22.83
Zm00001d016095_P001	Maize	nucleus	20.1	21.37

Protein Annotations

EntrezGene:103635409	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1Q1BUE1	ProteinID:AQK92466.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010052
GO:GO:0010377	GO:GO:0010444	GO:GO:0016043	GO:GO:0019538	GO:GO:0030154	GO:GO:0045597
GO:GO:0045893	GO:GO:0046983	GO:GO:0051782	GO:GO:0061086	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF46	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0004DECBA7	EnsemblPlantsGene:Zm00001d009715	EnsemblPlants:Zm00001d009715_P001	EnsemblPlants:Zm00001d009715_T001	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

bHLH-transcription factor 22Putative HLH DNA-binding domain superfamily protein

Coordinates

chr8:-:77390569..77394258

Molecular Weight (calculated)

44896.7 Da

IEP (calculated)

5.080

GRAVY (calculated)

-0.423

Length

418 amino acids

Sequence
(BLAST)

001: MDKEQQESHL DSFAPLDGAA APEDQQHQPA CGGGPEMVDY MLGRHHVNAH APPSPTQSQA VSFDKLSFSD VLQFADFGPK LALNHPVAAS VGGGEDADAD
101: DDDDGYFFRF QSLPQRHADR EAAGSKTTAE DGGGTGVVVS EGTTLVQQQA DHGRADKAGD QGKSGRRKRP RTVKTSEEVE SQRMTHIAVE RNRRRQMNEY
201: LRILRSLMPG SYVQRGDQAS IIGGAIEFIR ELEQLIQCLE SQKRRRLYGG SGDAPRPPVV DAAAGSGGAL ITSSTQPLAL QPPHLFPPTP SHPFPVAGAD
301: AKITLDLEAA GGAVVDDAGG GLREEVAENK SCLADIEVRA LGADAMIKIL SRRRPGQLIK TIAALEDMQM SILHTNITTI EQTVLYSFNI VGEARYSAED
401: IAGAVHQILS FIDVNYSL

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.