Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20089766
plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
20089766
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93246 | Sorghum | plastid | 88.94 | 88.06 |
| TraesCS5B01G466700.1 | Wheat | plastid | 81.91 | 79.51 |
| TraesCS5A01G457500.1 | Wheat | plastid | 81.91 | 79.51 |
| TraesCS5D01G468400.1 | Wheat | plastid | 80.9 | 78.92 |
| Os08t0560900-01 | Rice | extracellular, plastid | 80.4 | 78.82 |
| Zm00001d013039_P001 | Maize | plastid | 86.93 | 73.31 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 74.87 | 73.04 |
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 75.38 | 72.46 |
| KRG91274 | Soybean | nucleus, plastid | 73.87 | 72.41 |
| Solyc06g054260.1.1 | Tomato | plastid | 74.37 | 71.15 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 72.36 | 70.59 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 73.37 | 70.53 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 73.37 | 70.53 |
| KRH35533 | Soybean | plastid | 73.37 | 69.52 |
| AT1G03130.1 | Thale cress | plastid | 68.34 | 66.67 |
| AT4G02770.1 | Thale cress | plastid | 68.84 | 65.87 |
| CDY22079 | Canola | plastid | 40.7 | 54.0 |
| Bra036240.1-P | Field mustard | plastid | 68.34 | 48.75 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 66.83 | 48.54 |
| CDY21916 | Canola | plastid | 68.34 | 48.4 |
Protein Annotations
| MapMan:1.1.4.2.4 | EntrezGene:100191984 | Gene3D:3.30.1470.10 | UniProt:B4FAW3 | EMBL:BT034251 | EMBL:BT084938 |
| EMBL:EU961947 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009522 | GO:GO:0009538 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 |
| ProteinID:ONM10539.1 | PFAM:PF02531 | PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 | InterPro:PsaD | InterPro:PsaD_sf |
| SUPFAM:SSF64234 | UniParc:UPI00017B6226 | EnsemblPlantsGene:Zm00001d034543 | EnsemblPlants:Zm00001d034543_P001 | EnsemblPlants:Zm00001d034543_T001 | SEG:seg |
Description
Photosystem I reaction center subunit II-1 chloroplastic
Coordinates
chr1:+:295923427..295924026
Molecular Weight (calculated)
21577.9 Da
IEP (calculated)
10.318
GRAVY (calculated)
-0.367
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMATQASAA TRHLLAAAWA PAAKPRQLSS QLALPSSSSR GPAPLRASTE EAVEAPKGFV APQLDPSTPS PIFGGSTGGL LRKAQVEEFY VITWTSPKEQ
101: VFEMPTGGAA IMREGPNLLK LARKEQCLAL GTRLRSKYKI TYQFYRVFPN GEVQYLHPKD GVYPEKVNPG REGVGQNFRS IGKNVNPIDV KFTGKATFD
101: VFEMPTGGAA IMREGPNLLK LARKEQCLAL GTRLRSKYKI TYQFYRVFPN GEVQYLHPKD GVYPEKVNPG REGVGQNFRS IGKNVNPIDV KFTGKATFD
001: MATQAAGIFN SAITTAATSG VKKLHFFSTT HRPKSLSFTK TAIRAEKTDS SAAAAAAPAT KEAPVGFTPP QLDPNTPSPI FAGSTGGLLR KAQVEEFYVI
101: TWNSPKEQIF EMPTGGAAIM REGPNLLKLA RKEQCLALGT RLRSKYKITY QFYRVFPNGE VQYLHPKDGV YPEKANPGRE GVGLNMRSIG KNVSPIEVKF
201: TGKQSYDL
101: TWNSPKEQIF EMPTGGAAIM REGPNLLKLA RKEQCLALGT RLRSKYKITY QFYRVFPNGE VQYLHPKDGV YPEKANPGRE GVGLNMRSIG KNVSPIEVKF
201: TGKQSYDL
Arabidopsis Description
PSAD1Photosystem I reaction center subunit II-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7H1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.