Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G468400.1 | Wheat | plastid | 52.19 | 70.1 |
| TraesCS5B01G466700.1 | Wheat | plastid | 51.82 | 69.27 |
| TraesCS5A01G457500.1 | Wheat | plastid | 51.82 | 69.27 |
| EER93246 | Sorghum | plastid | 50.37 | 68.66 |
| Os08t0560900-01 | Rice | extracellular, plastid | 50.73 | 68.47 |
| Zm00001d034543_P001 | Maize | plastid | 48.54 | 66.83 |
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 48.18 | 63.77 |
| KRG91274 | Soybean | nucleus, plastid | 46.72 | 63.05 |
| Solyc06g054260.1.1 | Tomato | plastid | 47.81 | 62.98 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 47.45 | 62.8 |
| AT1G03130.1 | Thale cress | plastid | 46.35 | 62.25 |
| AT4G02770.1 | Thale cress | plastid | 47.08 | 62.02 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 45.99 | 61.76 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 45.99 | 61.76 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 46.35 | 61.35 |
| KRH35533 | Soybean | plastid | 46.72 | 60.95 |
| Zm00001d013039_P001 | Maize | plastid | 48.18 | 55.93 |
| CDY22079 | Canola | plastid | 27.74 | 50.67 |
| Bra036240.1-P | Field mustard | plastid | 47.45 | 46.59 |
| CDY21916 | Canola | plastid | 47.45 | 46.26 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G109710.2 | EnsemblPlantsGene:HORVU5Hr1G109710 | Gene3D:3.30.1470.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009538 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | InterPro:PsaD | InterPro:PsaD_sf | PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 |
| PFAM:PF02531 | SUPFAM:SSF64234 | UniParc:UPI000B487F69 | UniProt:A0A287SPH2 | MapMan:1.1.4.2.4 | : |
Description
No Description!
Coordinates
chrchr5H:-:630712447..630713548
Molecular Weight (calculated)
30633.7 Da
IEP (calculated)
10.829
GRAVY (calculated)
-0.725
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: PGSRDDEPWR AIRISSRGRC ASWQPGHTCT CVWWRCGEPG RIKIGTPHWP ASYRHIPLST PPHRLHPKPP YLLAQPSSPT HRPPDTTPSP ARACGLRSLP
101: HLLAKNHKLE RHRHGHGHAS LGGDAPPDHR GLVAIRQAPP RHPRHAFGGS TGGLLRKAQV EEFYVITWTS PKEQVFEMPT GGAAIMREGP NLLKLARKEQ
201: CLALGNRLRS KYKIAYQFYR VFPNGEVQYL HPKDGVYPEK VNAGRQGVGQ NFRSIGKNVS PIEVKFTGKN SFDI
101: HLLAKNHKLE RHRHGHGHAS LGGDAPPDHR GLVAIRQAPP RHPRHAFGGS TGGLLRKAQV EEFYVITWTS PKEQVFEMPT GGAAIMREGP NLLKLARKEQ
201: CLALGNRLRS KYKIAYQFYR VFPNGEVQYL HPKDGVYPEK VNAGRQGVGQ NFRSIGKNVS PIEVKFTGKN SFDI
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
Arabidopsis Description
PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.