Factsheet for HORVU7Hr1G100520.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G038680.8
HORVU1Hr1G075560.1
HORVU1Hr1G079910.1
HORVU3Hr1G039500.1
HORVU3Hr1G097420.1
HORVU4Hr1G012580.5
HORVU4Hr1G071510.2
HORVU4Hr1G078820.3
HORVU5Hr1G015120.1
HORVU5Hr1G052630.2
HORVU5Hr1G078170.27
HORVU5Hr1G092770.2
HORVU5Hr1G092900.2
HORVU5Hr1G109710.2
HORVU5Hr1G122800.4
HORVU6Hr1G093960.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	HORVU1Hr1G075560.1	AT1G45145.1	21798944
AT4G19700.1	HORVU3Hr1G039500.1	AT2G24570.1	21798944
AT4G19700.1	HORVU3Hr1G097420.1	AT2G24570.1	21798944
AT4G19700.1	HORVU4Hr1G012580.5	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G015120.1	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G052630.2	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G092770.2	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G122800.4	AT2G24570.1	21798944
AT4G19700.1	HORVU1Hr1G038680.8	AT2G33210.1	21798944
AT4G19700.1	HORVU4Hr1G071510.2	AT2G33210.1	21798944
AT4G19700.1	HORVU4Hr1G078820.3	AT2G33210.1	21798944
AT4G19700.1	HORVU5Hr1G078170.27	AT2G43370.1	21798944
AT4G19700.1	HORVU1Hr1G079910.1	AT3G13860.1	21798944
AT4G19700.1	HORVU5Hr1G109710.2	AT4G02770.1	21798944
AT4G19700.1	HORVU3Hr1G039500.1	AT4G31550.1	21798944
AT4G19700.1	HORVU3Hr1G097420.1	AT4G31550.1	21798944
AT4G19700.1	HORVU4Hr1G012580.5	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G015120.1	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G052630.2	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G092770.2	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G122800.4	AT4G31550.1	21798944
AT4G19700.1	HORVU6Hr1G093960.1	AT5G08330.1	21798944
AT4G19700.1	HORVU5Hr1G092900.2	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G431300.1	Wheat	mitochondrion	85.99	84.34
TraesCS7B01G340700.1	Wheat	mitochondrion	85.67	84.29
TraesCS7A01G442300.1	Wheat	mitochondrion	85.67	82.97
TraesCS7A01G442100.1	Wheat	mitochondrion	84.69	82.8
TraesCS7B01G340500.1	Wheat	mitochondrion	84.69	82.54
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	83.06	81.21
TraesCS7D01G431200.1	Wheat	mitochondrion	81.11	80.84
TraesCS7B01G340600.1	Wheat	mitochondrion	81.43	80.13
TraesCS7A01G441900.1	Wheat	mitochondrion	80.78	78.48
HORVU7Hr1G100540.2	Barley	mitochondrion	76.22	76.97
HORVU4Hr1G003180.3	Barley	mitochondrion	76.55	76.55
HORVU6Hr1G021960.1	Barley	plastid	44.63	52.49
HORVU6Hr1G021880.1	Barley	plastid	44.63	52.49
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	47.88	44.55
EER91098	Sorghum	nucleus	48.53	41.97
GSMUA_Achr7P00850_001	Banana	plastid	30.29	40.43
GSMUA_Achr4P23050_001	Banana	nucleus	24.76	40.43
GSMUA_Achr4P28300_001	Banana	nucleus	31.6	40.25
GSMUA_Achr5P02100_001	Banana	plastid	31.92	40.16
GSMUA_Achr2P13160_001	Banana	plastid	31.6	39.27
GSMUA_Achr4P32070_001	Banana	nucleus	34.85	37.41
GSMUA_Achr6P31690_001	Banana	nucleus	35.5	36.58
Zm00001d033419_P001	Maize	plastid	32.9	36.07
GSMUA_Achr9P09830_001	Banana	nucleus	35.18	33.64
Bra035092.1-P	Field mustard	nucleus	34.2	33.23
CDX87407	Canola	nucleus	34.2	33.23
CDY21311	Canola	cytosol	25.08	32.91
CDX94520	Canola	cytosol	25.08	32.91
CDY07541	Canola	cytosol	25.08	32.91
CDY09318	Canola	cytosol	25.08	32.91
VIT_19s0027g00740.t01	Wine grape	nucleus	32.9	32.69
KRH43767	Soybean	nucleus	26.38	32.02
CDX88507	Canola	nucleus	30.94	31.88
PGSC0003DMT400062617	Potato	nucleus	30.62	31.33
VIT_10s0042g01070.t01	Wine grape	nucleus	30.62	31.02
Solyc02g031710.2.1	Tomato	nucleus	30.94	30.65
KRH11729	Soybean	nucleus	30.94	30.35
AT4G19700.1	Thale cress	cytosol	29.97	30.26
KRH36722	Soybean	nucleus	30.29	30.0
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	28.66	29.73
CDY26402	Canola	cytosol	28.66	29.73
KRH50476	Soybean	cytosol, nucleus, plastid	30.94	29.69
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	30.94	29.41
KRG89416	Soybean	nucleus	29.97	29.3
AT5G45100.1	Thale cress	cytosol	28.01	29.25
AT3G12920.1	Thale cress	nucleus	31.6	28.96
CDY43390	Canola	cytosol	30.62	28.92
Bra039354.1-P	Field mustard	cytosol	30.62	28.92
CDY01615	Canola	cytosol	28.66	28.85
CDY24237	Canola	nucleus	30.29	28.7
Bra034718.1-P	Field mustard	nucleus	31.27	28.49
CDY71607	Canola	cytosol	28.34	28.43
Bra012532.1-P	Field mustard	nucleus	28.34	28.43
CDY64561	Canola	nucleus	31.27	28.24
Bra001477.1-P	Field mustard	nucleus	31.27	28.24
KRH13682	Soybean	nucleus	30.94	28.19
CDX79294	Canola	nucleus	27.69	27.96
CDX82568	Canola	nucleus	30.94	27.94
CDY51918	Canola	cytosol	26.06	27.87
CDY71192	Canola	cytosol	25.41	27.86
Bra013423.1-P	Field mustard	nucleus	26.71	27.7
AT1G79110.1	Thale cress	nucleus	32.25	27.65
CDY13070	Canola	cytosol	24.43	26.88
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	24.43	26.88
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	23.78	25.89
CDY18062	Canola	cytosol	23.78	25.89
CDY46345	Canola	cytosol	23.45	25.53
Solyc02g069180.2.1	Tomato	plastid	23.13	25.09
HORVU1Hr1G054930.3	Barley	cytosol	23.45	21.95
HORVU6Hr1G066640.4	Barley	nucleus	22.8	20.41
CDY23552	Canola	cytosol	14.33	20.28
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	18.24	15.18
HORVU4Hr1G061210.1	Barley	cytosol	17.26	12.83

Protein Annotations

EMBL:AK368499	EnsemblPlants:HORVU7Hr1G100520.1	EnsemblPlantsGene:HORVU7Hr1G100520	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI00020079C6	UniProt:F2DX81	MapMan:35.1

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DX81]

Coordinates

chrchr7H:+:605382110..605383628

Molecular Weight (calculated)

32628.0 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.244

Length

307 amino acids

Sequence
(BLAST)

001: MAVDLQRLRH MLLTTGDGAG HHQLASAAAA MPASGPCYGA AVPSQMGHQP NAGLFTPPPP PAAAAEQYSE FLAMAAADLA KKDVSLDGAQ EMITKKRRRD
101: KQSLMLGAAD VLAAHARQQT VDVDGILLKH AKKMWAALAE QRQSHMRLIV STVEARAAKR LKAKDEEIER IRGMNWALEE RLRNLFMEAQ LWRDVAQSNE
201: ATANVLRGDL QRALDAQAGD GQEDDAGSCC WGENQAPLCA EEEGTPAAVE ERHATGAGRC KGCREGAAVV LLLPCRHLCV CAPCAAAAQA CPACGSAKNG
301: SVCVNFS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.