Factsheet for HORVU4Hr1G078820.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G307700.1	Wheat	mitochondrion	90.17	98.78
TraesCS4A01G409100.1	Wheat	mitochondrion	90.17	98.78
Os03t0143400-01	Rice	mitochondrion	84.31	92.2
TraesCS4D01G305900.1	Wheat	golgi	94.61	90.73
KXG40202	Sorghum	cytosol	57.53	89.19
VIT_05s0051g00340.t01	Wine grape	mitochondrion	79.24	86.96
KRH34594	Soybean	mitochondrion	77.97	85.27
KRH33513	Soybean	mitochondrion	77.65	85.22
KRG92192	Soybean	mitochondrion	77.5	85.04
GSMUA_Achr10P...	Banana	mitochondrion	77.5	85.04
AT3G23990.1	Thale cress	mitochondrion	77.65	84.92
GSMUA_Achr1P11160_001	Banana	mitochondrion	77.65	84.78
KRG90277	Soybean	mitochondrion	77.02	84.52
Solyc05g053470.2.1	Tomato	plastid	76.7	84.47
Bra001934.1-P	Field mustard	mitochondrion	77.18	84.4
CDX94835	Canola	mitochondrion	77.18	84.4
PGSC0003DMT400030265	Potato	mitochondrion	76.86	84.35
CDX93002	Canola	mitochondrion	73.22	84.0
PGSC0003DMT400069855	Potato	mitochondrion	76.23	83.94
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	76.55	83.42
CDX84697	Canola	mitochondrion	74.01	82.95
CDY72107	Canola	mitochondrion	40.25	82.74
CDX79518	Canola	cytosol	26.47	82.67
Bra022931.1-P	Field mustard	mitochondrion	72.74	82.41
AT2G33210.1	Thale cress	mitochondrion	75.44	81.37
HORVU1Hr1G038680.8	Barley	mitochondrion	86.21	81.32
Bra005514.1-P	Field mustard	mitochondrion	71.95	81.22
CDY17152	Canola	mitochondrion	73.22	80.49
CDY19471	Canola	mitochondrion	75.12	79.93
CDY59050	Canola	cytosol	42.79	79.88
CDY59049	Canola	mitochondrion	25.04	72.48
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	62.28	67.64
Bra021836.1-P	Field mustard	cytosol	45.64	64.43
GSMUA_Achr10P...	Banana	cytosol	13.63	62.32
CDY66712	Canola	mitochondrion	57.84	60.53
CDY37741	Canola	mitochondrion	57.37	59.25
HORVU2Hr1G107410.2	Barley	cytosol	15.06	47.5
HORVU4Hr1G076680.1	Barley	cytosol	14.9	47.47
HORVU5Hr1G074160.1	Barley	cytosol	14.42	46.67
HORVU7Hr1G006490.2	Barley	cytosol	40.1	45.67
HORVU5Hr1G125130.1	Barley	plastid	40.1	43.1
HORVU6Hr1G005220.3	Barley	plastid	38.99	41.14
HORVU2Hr1G109400.1	Barley	cytosol	5.86	40.22
HORVU2Hr1G011340.1	Barley	cytosol	10.46	40.0
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	38.83	39.26
HORVU6Hr1G000180.2	Barley	plastid	39.46	38.25
HORVU2Hr1G077410.18	Barley	plastid	35.82	38.05
HORVU0Hr1G038830.17	Barley	plastid	35.18	37.63
HORVU4Hr1G066820.2	Barley	cytosol	13.95	37.45
HORVU4Hr1G071510.2	Barley	cytosol	41.68	36.94

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A287PSF7	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	EnsemblPlantsGene:HORVU4Hr1G078820	EnsemblPlants:HORVU4Hr1G078820.3
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000B483434	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:+:609242327..609247714

Molecular Weight (calculated)

66891.8 Da

IEP (calculated)

6.604

GRAVY (calculated)

-0.112

Length

631 amino acids

Sequence
(BLAST)

001: LASLPRSSGV SFPFSKLLPS FSPAPPPARR LQPSSPSRRD RPPDPTPSSI PPSVAMYRAA ASLASKARQA GSSARQVGSR LAWSRNYAAK DIRFGVEARA
101: LMLKGVEDLA DAVKLTMGPK GRTVIIEQSF GAPKVTKDGV TVAKSIEFSD RVKNVGASLV KQVANATNDT AGDGTTCATV LTKAIFTEGC KSVAAGMNAM
201: DLRRGISMAV DSVVTNLKGM ARMINTSEEI AQVGTISANG EREIGELIAK AMEKVGKEGV ITIADGNTLY NELEVVEGMK LDRGYISPYF ITNQKNQKCE
301: LDDPLILIHD KKVSNLRSLV KVLEFALQKQ KPLLIVAEDL ESEALGTLIL NKLRGGFKVC AIKAPGFGEN RKSNLQDLAI LTGGEVITEE LGMNLENFEP
401: SMLGTCKKVT ISKDDTVILD GAGDKKAIEE RAELLRSSIE QCTSDYDKEK IQERLAKLSG GVAVLKIGGA SEAEVGEKKD RVTDALNATK AAVEEGIVPG
501: GGVALLYASK DLDKLPTANF DQKIGVQIIQ NALKTPVHTI ATNAGVEGAV IVGKLLEQDN TDLGYDAAKG EYVDMVKAGI IDPLKVIRTA LVDAASVSSL
601: MTTTEAIIVE IPKEEKSAPA MGGGGMGGME F

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.