CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17152	Canola	mitochondrion	94.94	98.08
CDX79518	Canola	cytosol	33.39	98.02
CDX84697	Canola	mitochondrion	91.4	96.27
CDY72107	Canola	mitochondrion	49.58	95.77
AT2G33210.1	Thale cress	mitochondrion	90.56	91.79
CDX94835	Canola	mitochondrion	83.31	85.62
CDX93002	Canola	mitochondrion	79.26	85.45
Os10t0462900-01	Rice	mitochondrion	81.96	84.67
PGSC0003DMT400069855	Potato	mitochondrion	81.62	84.47
GSMUA_Achr10P...	Banana	mitochondrion	81.79	84.35
Solyc05g053470.2.1	Tomato	plastid	81.28	84.12
Zm00001d014090_P002	Maize	mitochondrion	81.79	84.06
Zm00001d032789_P001	Maize	plastid	81.62	84.03
TraesCS1A01G145000.1	Wheat	mitochondrion	81.11	83.8
TraesCS1B01G162300.1	Wheat	mitochondrion	81.11	83.8
TraesCS1D01G144000.1	Wheat	mitochondrion	81.11	83.8
GSMUA_Achr1P11160_001	Banana	mitochondrion	81.62	83.74
EER94121	Sorghum	mitochondrion	81.45	83.71
Os03t0143400-01	Rice	mitochondrion	81.45	83.71
PGSC0003DMT400030265	Potato	mitochondrion	81.11	83.65
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	80.78	82.73
TraesCS4A01G409100.1	Wheat	mitochondrion	79.76	82.12
TraesCS4B01G307700.1	Wheat	mitochondrion	79.43	81.77
KXG40202	Sorghum	cytosol	54.3	79.12
CDY59050	Canola	cytosol	45.03	78.99
HORVU4Hr1G078820.3	Barley	plastid	79.93	75.12
HORVU1Hr1G038680.8	Barley	mitochondrion	81.62	72.35
CDY59049	Canola	mitochondrion	26.48	72.02
TraesCS4D01G305900.1	Wheat	golgi	79.6	71.73
CDY66712	Canola	mitochondrion	70.83	69.65
CDX82514	Canola	mitochondrion	65.94	68.36
CDX75733	Canola	mitochondrion	65.6	68.01
CDY37741	Canola	mitochondrion	69.65	67.59
GSMUA_Achr10P...	Banana	cytosol	13.15	56.52
TraesCS4B01G266200.1	Wheat	cytosol	36.93	52.77
CDY11918	Canola	plastid	45.53	45.38
CDY32855	Canola	plastid	44.69	44.61
CDY68896	Canola	cytosol	24.96	43.92
CDY36809	Canola	plastid	44.86	43.82
CDX82537	Canola	plastid	42.66	43.1
CDX75713	Canola	plastid	42.66	42.66
CDX83280	Canola	plastid	41.48	42.27
CDY30514	Canola	plastid	41.65	42.22
CDX75715	Canola	cytosol	39.97	42.1
CDY08245	Canola	plastid	42.5	42.0
CDY31190	Canola	plastid	41.48	41.98
CDY04527	Canola	plastid	42.16	41.95
CDY26100	Canola	plastid	42.83	40.45
CDX71396	Canola	plastid	35.58	39.89
CDX77147	Canola	plastid	41.82	39.87
CDY20555	Canola	plastid	40.13	39.21
CDY66193	Canola	plastid	39.97	39.04
CDY32775	Canola	cytosol	5.56	38.82
CDY23605	Canola	cytosol	27.49	37.56
CDY02601	Canola	plastid	36.42	37.37
CDX72433	Canola	endoplasmic reticulum	19.9	37.34
CDY47184	Canola	plastid	36.09	37.02
CDY02438	Canola	cytosol	43.0	36.59
CDY31193	Canola	plastid	14.17	35.44
CDY56074	Canola	plastid	26.48	33.05
HORVU4Hr1G071510.2	Barley	cytosol	39.46	32.87
CDY10302	Canola	extracellular	3.54	32.31
CDY43988	Canola	cytosol	27.15	31.32
CDY10557	Canola	endoplasmic reticulum, plastid	43.0	30.76
CDY40825	Canola	endoplasmic reticulum, vacuole	9.44	26.29
CDY56079	Canola	plastid	5.9	26.12
CDX86994	Canola	mitochondrion, plastid	30.19	25.5
CDX85007	Canola	cytosol, plastid	24.96	14.74

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078G2D8	UniProt:A0A078G2D8
EnsemblPlants:CDY19471	ProteinID:CDY19471	ProteinID:CDY19471.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00009060001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EF2B72
SEG:seg	:	:	:	:	:

Description

BnaC04g11280DBnaC04g11280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2D8]

Coordinates

chrLK032096:-:453792..457520

Molecular Weight (calculated)

62922.3 Da

IEP (calculated)

5.822

GRAVY (calculated)

-0.036

Length

593 amino acids

Sequence
(BLAST)

001: MYRLVSSVAS KARVARNCTT QIGSRLSATR NYAAKDIKFG VEGRALMLRG VEELADAVQV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRVKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLKSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMESV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNQK NQKCELEDPL ILIHEKKISN LNSIVKVLEL ALKKQRPLLI VAEDLDSEAL AVLILNKLRA
301: GIKVCAVKAP GFGENRKANL QDLAILTGAQ ASTYLLFYYM QELGMNLEKV DLSMFGNCKK ITVSKDDTVF LDGAGDKKSI SERCEQIRSM VEASESDYDK
401: EKLQERLAKL SGGVAVLKIG GASESEVGEK KDRVTDALNA TKAAVEEGIV PGGGVALLYA SKELEKLSTA NFDQKIGVQI IQNALKTPVY TIASNAGVEG
501: AVVVGKLLES DDPDLGYDAA KGEYVDMVKS GIIDPVKVIR TALVDAASVA SLLTTTEAVV TDIPTKEDAS PAMGGGGGMG GMGGMGGMGG MGF

Best Arabidopsis Sequence Match ( AT2G33210.1 )
(BLAST)

001: MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMETV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA
301: NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASETEV SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT PVYTIASNAG VEGAVVVGKL
501: LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

Arabidopsis Description

HSP60-2Chaperonin CPN60-like 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7B5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.