Factsheet for Os10t0462900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

mitochondrion: 16429260
mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94121	Sorghum	mitochondrion	96.86	96.36
Zm00001d014090_P002	Maize	mitochondrion	96.52	96.01
Zm00001d032789_P001	Maize	plastid	96.17	95.83
Os03t0143400-01	Rice	mitochondrion	95.3	94.8
TraesCS1B01G162300.1	Wheat	mitochondrion	94.6	94.6
TraesCS1A01G145000.1	Wheat	mitochondrion	94.6	94.6
TraesCS1D01G144000.1	Wheat	mitochondrion	94.08	94.08
VIT_05s0051g00340.t01	Wine grape	mitochondrion	90.07	89.91
KRH33513	Soybean	mitochondrion	88.15	88.0
GSMUA_Achr1P11160_001	Banana	mitochondrion	88.5	87.89
KRG90277	Soybean	mitochondrion	87.98	87.83
AT3G23990.1	Thale cress	mitochondrion	87.98	87.52
GSMUA_Achr10P...	Banana	mitochondrion	87.63	87.48
Bra001934.1-P	Field mustard	mitochondrion	87.8	87.35
Solyc05g053470.2.1	Tomato	plastid	87.11	87.26
KRH34594	Soybean	mitochondrion	87.63	87.17
KRG92192	Soybean	mitochondrion	87.28	87.13
PGSC0003DMT400069855	Potato	mitochondrion	86.93	87.09
CDX94835	Canola	mitochondrion	87.46	87.0
CDX93002	Canola	mitochondrion	83.28	86.91
PGSC0003DMT400030265	Potato	mitochondrion	85.71	85.57
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	85.37	84.63
CDX84697	Canola	mitochondrion	82.4	84.01
AT2G33210.1	Thale cress	mitochondrion	85.02	83.42
CDY72107	Canola	mitochondrion	44.6	83.39
Bra022931.1-P	Field mustard	mitochondrion	80.66	83.12
Bra005514.1-P	Field mustard	mitochondrion	80.84	83.01
CDY59050	Canola	cytosol	48.78	82.84
CDX79518	Canola	cytosol	29.09	82.67
CDY17152	Canola	mitochondrion	82.4	82.4
CDY19471	Canola	mitochondrion	84.67	81.96
HORVU1Hr1G038680.8	Barley	mitochondrion	95.3	81.76
CDY59049	Canola	mitochondrion	27.7	72.94
Os05t0540300-01	Rice	mitochondrion	69.51	68.67
Bra021836.1-P	Field mustard	cytosol	51.22	65.77
GSMUA_Achr10P...	Banana	cytosol	15.51	64.49
CDY66712	Canola	mitochondrion	64.98	61.86
CDY37741	Canola	mitochondrion	63.94	60.07
Os03t0859600-01	Rice	plastid	24.91	45.83
Os02t0102900-01	Rice	plastid	47.39	45.48
Os06t0114000-02	Rice	plastid	46.34	44.26
Os12t0277500-01	Rice	plastid	43.73	43.43
Os03t0859700-00	Rice	extracellular, plastid	13.07	40.54
Os04t0443900-01	Rice	plastid	40.94	39.97
Os09t0563300-02	Rice	plastid	39.02	38.36
Os02t0103100-01	Rice	plasma membrane, vacuole	0.17	0.68

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:AAN05528.1	ProteinID:BAF26698.1
ProteinID:BAT11185.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	ProteinID:EEE51095.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183
GO:GO:0045041	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	EMBL:GU120332	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	EnsemblPlantsGene:Os10g0462900	EnsemblPlants:Os10t0462900-01
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	UniProt:Q8H903
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00000AD121
SEG:seg	:	:	:	:	:

Description

Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Similar to mitochondrial chaperonin-60. (Os10t0462900-02)

Coordinates

chr10:+:17048051..17053406

Molecular Weight (calculated)

60853.7 Da

IEP (calculated)

5.552

GRAVY (calculated)

-0.076

Length

574 amino acids

Sequence
(BLAST)

001: MYRAAASLAS KARQAGSSAR QVGSRLALSR NYAAKDIKFG VEARALMLRG VEELADAVKV TMGPKGRNVV IEQSYGSPKV TKDGVTVAKS IEFKDRVKNV
101: GASLVKQVAN ATNDTAGDGT TCATVLTKAI FTEGCKSVAA GMNAMDLRRG ISMAVDAVVT NLKGMARMIS TSEEIAQVGT ISANGEREIG ELIAKAMEKV
201: GKEGVITIAD GNTLYNELEV VEGMKLDRGY ISPYFVTNPK TQKCELDDPL ILIHDKKVSN LHAVVKVLEL ALKKQRPLLI VAEDVESEAL GTLIINKLRA
301: GIKVCAVKAP GFGENRKANL QDLAILTGGE VITEELGMNL EKFEPQMLGT CKKVTVSKDD TVILDGAGDK KSIEERAEQI RSAIELSTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASEAEV GEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELDKL PTANFDQKIG VQIIQNALKT PVHTIASNAG VEGAVVVGKL
501: LEQDNTDLGY DAAKGEYVDM VKAGIIDPLK VIRTALVDAA SVSSLMTTTE SIIVEIPKEE KEAPAMGGMG GMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.