Factsheet for Os05t0540300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0276800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	Os01t0276800-01	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038857_P001	Maize	mitochondrion	89.33	89.48
EES19881	Sorghum	mitochondrion	89.16	89.16
TraesCS1D01G365800.1	Wheat	mitochondrion	87.26	87.72
TraesCS1A01G361400.1	Wheat	mitochondrion	87.26	87.56
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	87.44	87.44
TraesCS1B01G378000.1	Wheat	mitochondrion	87.61	87.31
GSMUA_Achr7P24090_001	Banana	cytosol	69.19	75.85
PGSC0003DMT400006642	Potato	cytosol	66.09	75.15
VIT_09s0002g02240.t01	Wine grape	mitochondrion	68.5	72.23
Solyc03g121640.2.1	Tomato	plastid	70.05	71.03
KRH47114	Soybean	mitochondrion	69.36	70.21
CDX82514	Canola	mitochondrion	69.02	70.1
KRH44140	Soybean	mitochondrion	69.19	70.03
Bra001524.1-P	Field mustard	mitochondrion	68.85	69.93
CDX75733	Canola	mitochondrion	68.85	69.93
AT3G13860.1	Thale cress	mitochondrion	68.5	69.58
Os10t0462900-01	Rice	mitochondrion	68.67	69.51
Os03t0143400-01	Rice	mitochondrion	67.81	68.28
Os02t0102900-01	Rice	plastid	44.41	43.14
Os03t0859600-01	Rice	plastid	23.06	42.95
Os06t0114000-02	Rice	plastid	43.55	42.1
Os12t0277500-01	Rice	plastid	40.79	41.0
Os09t0563300-02	Rice	plastid	37.69	37.5
Os03t0859700-00	Rice	extracellular, plastid	11.88	37.3
Os04t0443900-01	Rice	plastid	37.01	36.56
Os02t0103100-01	Rice	plasma membrane, vacuole	0.17	0.68

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:4339466	ProteinID:AAV67812.1
ProteinID:BAF18095.1	ProteinID:BAS95112.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
ProteinID:EEE64532.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0045041
GO:GO:0046686	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	EnsemblPlantsGene:Os05g0540300	EnsemblPlants:Os05t0540300-01	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	UniProt:Q5TKQ5	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000046F53B	RefSeq:XP_015639320.1
SEG:seg	:	:	:	:	:

Description

Similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2). (Os05t0540300-01)

Coordinates

chr5:-:26835675..26840306

Molecular Weight (calculated)

61592.6 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.094

Length

581 amino acids

Sequence
(BLAST)

001: MYRAAAAAAS SISRSSSALR KQLSRGGCGE QRLWARGYAA KEVAFGVGAR AALLQGVNDL ADAVKVTMGP KGRNVIIERS HRAPKVTKDG VTVAKSIEFE
101: DSAKNVGANL VKQVAEATNK VAGDGTTCAT VLTQAILTEG CKAVAAGVNV MDLRNGINKA ISSITTHLKS KAWIINSSEE INQVATISAN GEKEIGDLIS
201: KAMEKVGKDG VITITDGKTL DNELEAVQGM KLSRGYISPY FVTDQKTQKC EMENPLILIH DKKISTMNSL LPVLEMSIKN RRPLLIIAED VEGEALSMLV
301: LNKHRAGLKI CAVKAPGFGE NRRANLDDVA VLTGGEVVSE DQGLDLGKVE LQMLGTAKKV TVSLDDTIIL DGGGDKQQIE ERCQQLRESM DKSTAVFDKE
401: KAQERLSKLS GGVAVLKIGG ASEVEVGEKK DRVTDALHAA RAAVEEGIVP GGGVALLYAT KELDKIITAN EDEKIGVQII KNALKAPLMT IAANAGIDGG
501: VVIGKLIEQD NLNMGYDAAR GEYVDMIKAG IIDPVKVIRT ALQDASSVSL LMTTTEAAVA EPPAAKARMA SRMPQMSGMD F

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.