Factsheet for Solyc03g121640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g099660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	Solyc12g099660.1.1	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006642	Potato	cytosol	88.48	99.22
VIT_09s0002g02240.t01	Wine grape	mitochondrion	77.84	80.94
AT3G13860.1	Thale cress	mitochondrion	79.23	79.37
CDX82514	Canola	mitochondrion	78.88	79.02
Bra001524.1-P	Field mustard	mitochondrion	78.71	78.85
CDX75733	Canola	mitochondrion	78.71	78.85
GSMUA_Achr7P24090_001	Banana	cytosol	72.77	78.68
KRH47114	Soybean	mitochondrion	77.66	77.53
KRH44140	Soybean	mitochondrion	76.96	76.83
Solyc05g053470.2.1	Tomato	plastid	71.73	71.73
Zm00001d038857_P001	Maize	mitochondrion	72.25	71.38
EES19881	Sorghum	mitochondrion	72.08	71.08
Os05t0540300-01	Rice	mitochondrion	71.03	70.05
TraesCS1D01G365800.1	Wheat	mitochondrion	70.33	69.72
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	70.51	69.54
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	70.16	69.43
TraesCS1A01G361400.1	Wheat	mitochondrion	70.16	69.43
TraesCS1B01G378000.1	Wheat	mitochondrion	70.16	68.95
Solyc03g120850.2.1	Tomato	plastid	43.11	40.83
Solyc01g028810.2.1	Tomato	plastid	42.41	40.57
Solyc05g010240.2.1	Tomato	plastid	37.17	39.37
Solyc06g075010.2.1	Tomato	plastid	39.27	38.2
Solyc11g069790.1.1	Tomato	plastid	38.92	37.93
Solyc02g068730.2.1	Tomato	plastid	34.73	34.13

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0045041
GO:GO:0046686	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:K4BMW3	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
EnsemblPlantsGene:Solyc03g121640.2	EnsemblPlants:Solyc03g121640.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00027655A6	:

Description

No Description!

Coordinates

chr3:+:69735709..69743120

Molecular Weight (calculated)

60758.6 Da

IEP (calculated)

7.424

GRAVY (calculated)

-0.032

Length

573 amino acids

Sequence
(BLAST)

001: MFRAAAAVAS SIRFSTSRKL VSSRIISSRN YAAKDISFGS HARLAMLQGV NELAEAVKVT MGPKGRNVII EKSPGNPKVT KDGVTVAKSI NFKEKAKNVG
101: ADLVKQVANA TNSVAGDGTT CATVLTQAIF TEGCKAVAAG VSVMDLRNGI NMAIDAVVAD LKSRAVMIST PEEITQVGTI SANGEREIGE IIARAMEKVG
201: KEGVITVADG NTLDNDLEVV EGMKLGRGYI SPYFVTDEKT QKCELENPLI LIHDKKISDL NSLVRILELA LKRRSPLLIV AEDVESDALA MLILNKHRAG
301: IKVCAIKAPG FGDNRRANLE DLAVLTGGEV ISEERGLDLS KVQFDMLGTA KKVTVSLDDT LVLHGGGDKK LIEERCEQLR IAKEKSSAMF DKEKAQERLS
401: KLSGGVAVFK VGGASEAEVG ERKDRVTDAL NATRAAVEEG IVPGGGVALL YATKCLKGLQ TANDGQKRGV EIIENALKAP TFTIASNAGA DGALVVGKLL
501: EQDDLNLGYD AAKGTYLHMV KAGIIDPVKV VRTALMDAAS VSLLLTTAEA AIVDRQGEEN PLANRMPNMG GMY

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.