Factsheet for Solyc03g120850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006501	Potato	plastid	98.02	98.02
VIT_09s0002g03930.t01	Wine grape	plastid	85.12	84.56
Zm00001d035937_P001	Maize	plastid	80.33	83.94
Solyc01g028810.2.1	Tomato	plastid	82.31	83.14
EER89076	Sorghum	plastid	79.5	83.07
TraesCS6B01G012000.1	Wheat	cytosol	56.36	82.97
HORVU7Hr1G006490.2	Barley	cytosol	75.7	82.67
Os06t0114000-02	Rice	plastid	81.16	81.7
TraesCS4A01G452700.2	Wheat	plastid	78.84	81.68
GSMUA_Achr3P27620_001	Banana	plastid	82.15	81.21
Zm00001d045544_P002	Maize	plastid	79.83	80.5
GSMUA_Achr9P23240_001	Banana	plastid	81.32	80.39
HORVU4Hr1G076680.1	Barley	cytosol	26.28	80.3
HORVU2Hr1G107410.2	Barley	cytosol	26.12	79.0
HORVU5Hr1G074160.1	Barley	cytosol	25.45	78.97
TraesCS7A01G036200.2	Wheat	golgi	80.33	78.39
Os02t0102900-01	Rice	plastid	77.19	78.09
TraesCS6A01G006400.1	Wheat	golgi	77.19	78.09
TraesCS6D01G009100.1	Wheat	golgi	77.02	77.93
TraesCS7D01G032800.1	Wheat	cytosol	80.5	77.42
TraesCS6B01G011800.1	Wheat	plastid	75.87	77.4
TraesCS6B01G012100.3	Wheat	plastid	76.36	77.0
KXG29249	Sorghum	plastid	76.86	76.99
Zm00001d054089_P002	Maize	plastid	75.87	74.39
Zm00001d016540_P001	Maize	cytosol	12.4	72.12
TraesCS6A01G028100.1	Wheat	plastid	70.74	71.57
TraesCS6D01G031400.1	Wheat	plastid	70.58	71.4
HORVU6Hr1G005220.3	Barley	plastid	70.58	71.4
TraesCS6B01G039300.2	Wheat	plastid	70.58	71.4
Zm00001d053279_P001	Maize	mitochondrion	18.18	70.06
GSMUA_Achr11P...	Banana	plastid	79.67	69.25
Zm00001d046709_P001	Maize	mitochondrion	17.69	68.15
HORVU6Hr1G000180.2	Barley	plastid	71.41	66.36
HORVU4Hr1G066820.2	Barley	cytosol	25.45	65.53
Solyc05g010240.2.1	Tomato	plastid	56.69	63.4
Zm00001d037526_P001	Maize	plastid	18.51	63.28
Solyc11g069790.1.1	Tomato	plastid	46.78	48.13
Solyc06g075010.2.1	Tomato	plastid	45.45	46.69
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	43.31	45.25
Solyc05g053470.2.1	Tomato	plastid	42.81	45.2
Solyc02g068730.2.1	Tomato	plastid	42.31	43.91
Solyc03g121640.2.1	Tomato	plastid	40.83	43.11
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:K4BMN4	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF96	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
EnsemblPlantsGene:Solyc03g120850.2	EnsemblPlants:Solyc03g120850.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0002766F47	:

Description

No Description!

Coordinates

chr3:-:69097571..69103002

Molecular Weight (calculated)

64228.0 Da

IEP (calculated)

5.203

GRAVY (calculated)

-0.118

Length

605 amino acids

Sequence
(BLAST)

001: MAATFTSVCS ISSTSQTVEK KIINSCETLS SFSGISLTSL GGRRKNNVLK KRNDSKIQAM AKELHFNQDG SAIKKLQAGV NKLADLVGVT LGPKGRNVVL
101: ESKYGSPKIV NDGVTVAREV ELEDPVENIG ASLVRQAASK TNDLAGDGTT TSVVLAQGLI TEGVKVVAAG ANPIQIARGI DRTTKALVSE LKKLSKEVED
201: SELADVAAVS AGNNYEVGNM IAEALSKVGR KGVVTLEEGR GSENNLFVVE GMQFDRGYIS PYFVTDNEKM VAEYENCKLL LVDKKITNAR DLVNVLEEAI
301: KNGYPILVIA EDIEQEALAT LVVNKLRGAL KIAALKAPGF GDRKSQYLDD IAILTGGTVI REEVGLYLDQ AGSEVLGNAA KVVLSKDSTT IVGDGSTQDA
401: VSKRVAQIKR LLEEAEQDYE KEKLNERIAK LSGGVAVIQV GAQTETELKE KKLRVEDALN ATKAAVDEGI VVGGGCTLLR LAAKVEGIKG TLDNDEQKIG
501: ADIVKRALRY PMKLIAKNAG VNGSVVIEKV LSNDNPNYGY NAATGNYEDL MAAGIIDPTK VVRCCLEHAA SVARTFLTSD AVVTEIKVPE PAVAGNPMDN
601: SGYGA

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.