Factsheet for Zm00001d016540_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053279_P001	Maize	mitochondrion	94.23	62.42
Zm00001d046709_P001	Maize	mitochondrion	94.23	62.42
Zm00001d037526_P001	Maize	plastid	97.12	57.06
Zm00001d017567_P001	Maize	cytosol	76.92	48.48
CDX72433	Canola	endoplasmic reticulum	72.12	23.73
Zm00001d051252_P001	Maize	cytosol	36.54	18.54
CDY23605	Canola	cytosol	70.19	16.82
EER89076	Sorghum	plastid	89.42	16.06
Zm00001d035937_P001	Maize	plastid	88.46	15.89
HORVU7Hr1G006490.2	Barley	cytosol	83.65	15.7
Zm00001d045544_P002	Maize	plastid	89.42	15.5
Os06t0114000-02	Rice	plastid	88.46	15.31
TraesCS4A01G452700.2	Wheat	plastid	84.62	15.07
CDX75715	Canola	cytosol	79.81	14.74
GSMUA_Achr3P27620_001	Banana	plastid	83.65	14.22
TraesCS7A01G036200.2	Wheat	golgi	84.62	14.19
CDX82537	Canola	plastid	79.81	14.14
TraesCS7D01G032800.1	Wheat	cytosol	84.62	13.99
Bra001507.1-P	Field mustard	plastid	78.85	13.9
GSMUA_Achr9P23240_001	Banana	plastid	81.73	13.89
CDX75713	Canola	plastid	77.88	13.66
KRH13605	Soybean	nucleus	76.92	13.54
KRH43861	Soybean	plastid	76.92	13.51
VIT_06s0004g00240.t01	Wine grape	plastid	78.85	13.49
Solyc01g028810.2.1	Tomato	plastid	76.92	13.36
PGSC0003DMT400061700	Potato	extracellular	76.92	13.36
CDY08245	Canola	plastid	76.92	13.33
Bra011919.1-P	Field mustard	plastid	77.88	13.32
AT3G13470.1	Thale cress	plastid	75.96	13.26
CDY43988	Canola	cytosol	65.38	13.23
AT1G55490.3	Thale cress	plastid	75.96	13.17
Bra027431.1-P	Field mustard	cytosol	65.38	13.1
VIT_09s0002g03930.t01	Wine grape	plastid	75.96	12.97
Zm00001d054089_P002	Maize	plastid	76.92	12.97
Bra028922.1-P	Field mustard	plastid	73.08	12.86
CDY32855	Canola	plastid	73.08	12.79
CDY11918	Canola	plastid	73.08	12.77
CDY26100	Canola	plastid	76.92	12.74
AT5G56500.2	Thale cress	plastid	73.08	12.73
CDY36809	Canola	plastid	73.08	12.52
PGSC0003DMT400006501	Potato	plastid	72.12	12.4
Solyc03g120850.2.1	Tomato	plastid	72.12	12.4
CDX86994	Canola	mitochondrion, plastid	81.73	12.11
Bra030858.1-P	Field mustard	cytosol	76.92	11.61
CDY02438	Canola	cytosol	76.92	11.48
CDY10557	Canola	endoplasmic reticulum, plastid	77.88	9.77
Zm00001d028409_P001	Maize	plastid	50.0	8.84
Zm00001d000399_P001	Maize	plastid	40.38	7.19
Zm00001d034919_P001	Maize	plastid	36.54	6.51
Zm00001d014090_P002	Maize	mitochondrion	35.58	6.41
Zm00001d038857_P001	Maize	mitochondrion	34.62	6.21
Zm00001d032789_P001	Maize	plastid	33.65	6.08
CDY56074	Canola	plastid	25.96	5.68
Zm00001d013912_P001	Maize	mitochondrion	6.73	5.47
CDX85007	Canola	cytosol, plastid	50.96	5.28
Zm00001d005373_P001	Maize	plastid	36.54	3.16
Zm00001d031503_P001	Maize	endoplasmic reticulum	1.92	1.61
CDY10302	Canola	extracellular	0.0	0.0
CDY40825	Canola	endoplasmic reticulum, vacuole	0.0	0.0
CDY32775	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d016540_P001	EnsemblPlants:Zm00001d016540_T001	EnsemblPlantsGene:Zm00001d016540	Gene3D:3.50.7.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	ncoils:Coil	PANTHER:PTHR11353
PANTHER:PTHR11353:SF8	ProteinID:AQK71117.1	SUPFAM:SSF52029	UniParc:UPI0008444D48	UniProt:A0A1D6H8S2	MapMan:35.1

Description

Chaperonin 60 subunit beta 2 chloroplastic

Coordinates

chr5:-:166688943..166690816

Molecular Weight (calculated)

11321.6 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.201

Length

104 amino acids

Sequence
(BLAST)

001: MTTATVIRDE VGLSLDKADK SVLGTVAKVV LTKESTTIVG DGSTQEEVTK RVAQIKNLIE AAEQEYEKEK LNERIVKLAG GVAVIQVGAQ TETELKEITH
101: HLFE

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.