Factsheet for Zm00001d017567_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016540_P001	Maize	cytosol	48.48	76.92
Zm00001d053279_P001	Maize	mitochondrion	66.06	69.43
Zm00001d046709_P001	Maize	mitochondrion	64.85	68.15
Zm00001d037526_P001	Maize	plastid	66.67	62.15
Zm00001d035937_P001	Maize	plastid	96.36	27.46
Zm00001d045544_P002	Maize	plastid	97.58	26.83
Zm00001d013912_P001	Maize	mitochondrion	19.39	25.0
Zm00001d054089_P002	Maize	plastid	83.64	22.37
Zm00001d051252_P001	Maize	cytosol	20.0	16.1
Zm00001d028409_P001	Maize	plastid	56.36	15.82
Zm00001d000399_P001	Maize	plastid	50.3	14.21
Zm00001d034919_P001	Maize	plastid	47.27	13.36
Zm00001d014090_P002	Maize	mitochondrion	44.85	12.82
Zm00001d032789_P001	Maize	plastid	43.64	12.5
Zm00001d038857_P001	Maize	mitochondrion	42.42	12.07
Zm00001d031503_P001	Maize	endoplasmic reticulum	4.24	5.65
Zm00001d005373_P001	Maize	plastid	39.39	5.41

Protein Annotations

EnsemblPlants:Zm00001d017567_P001	EnsemblPlants:Zm00001d017567_T001	EnsemblPlantsGene:Zm00001d017567	Gene3D:3.50.7.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Cpn60/TCP-1	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	ncoils:Coil
PANTHER:PTHR11353	PANTHER:PTHR11353:SF8	PFAM:PF00118	ProteinID:AQK73463.1	SUPFAM:SSF52029	UniParc:UPI000220E804
UniProt:A0A1D6HFQ3	MapMan:35.1	:	:	:	:

Description

Chaperonin 60 subunit beta 2 chloroplastic

Coordinates

chr5:-:199833167..199834977

Molecular Weight (calculated)

17781.8 Da

IEP (calculated)

6.965

GRAVY (calculated)

0.084

Length

165 amino acids

Sequence
(BLAST)

001: MKLLLVDNKI TNARDLINVL EEAIRGAYPI LIIAEDIEQE ALATLVVNKL RGSLKIAAIK APGFGERKTQ YLDDIAILTG ATVIRDEVGL SLDKADKSVL
101: GTAAKVVLTK GSTTIVGDGS TQEEVTKRVA QIKNLIEAAE QEYKKEKLNE RIAKLAGGVA VIQLM

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.