Factsheet for Zm00001d032789_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014090_P002	Maize	mitochondrion	97.92	97.75
EER94121	Sorghum	mitochondrion	97.92	97.75
Os10t0462900-01	Rice	mitochondrion	95.83	96.17
TraesCS1B01G162300.1	Wheat	mitochondrion	94.62	94.95
TraesCS1A01G145000.1	Wheat	mitochondrion	94.62	94.95
TraesCS1D01G144000.1	Wheat	mitochondrion	94.1	94.43
VIT_05s0051g00340.t01	Wine grape	mitochondrion	88.72	88.87
KRH33513	Soybean	mitochondrion	87.67	87.83
GSMUA_Achr1P11160_001	Banana	mitochondrion	88.02	87.72
KRH34594	Soybean	mitochondrion	87.67	87.52
KRG92192	Soybean	mitochondrion	87.33	87.48
KRG90277	Soybean	mitochondrion	87.33	87.48
GSMUA_Achr10P...	Banana	mitochondrion	86.98	87.13
Solyc05g053470.2.1	Tomato	plastid	85.94	86.39
PGSC0003DMT400069855	Potato	mitochondrion	85.76	86.21
Bra001934.1-P	Field mustard	mitochondrion	86.28	86.14
AT3G23990.1	Thale cress	mitochondrion	86.11	85.96
CDX94835	Canola	mitochondrion	85.94	85.79
CDX93002	Canola	mitochondrion	81.77	85.64
PGSC0003DMT400030265	Potato	mitochondrion	84.38	84.52
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	84.03	83.59
CDX84697	Canola	mitochondrion	81.6	83.48
CDY72107	Canola	mitochondrion	44.44	83.39
AT2G33210.1	Thale cress	mitochondrion	84.38	83.08
Bra005514.1-P	Field mustard	mitochondrion	80.21	82.65
Bra022931.1-P	Field mustard	mitochondrion	79.86	82.59
CDX79518	Canola	cytosol	28.82	82.18
CDY17152	Canola	mitochondrion	81.77	82.06
CDY19471	Canola	mitochondrion	84.03	81.62
CDY59050	Canola	cytosol	47.57	81.07
HORVU1Hr1G038680.8	Barley	mitochondrion	94.1	81.02
CDY59049	Canola	mitochondrion	27.78	73.39
Zm00001d013912_P001	Maize	mitochondrion	15.8	71.09
Zm00001d038857_P001	Maize	mitochondrion	67.71	67.24
Bra021836.1-P	Field mustard	cytosol	51.04	65.77
GSMUA_Achr10P...	Banana	cytosol	15.1	63.04
CDY66712	Canola	mitochondrion	64.93	62.02
CDY37741	Canola	mitochondrion	63.89	60.23
Zm00001d035937_P001	Maize	plastid	45.31	45.08
Zm00001d045544_P002	Maize	plastid	45.66	43.83
Zm00001d034919_P001	Maize	plastid	44.27	43.66
Zm00001d017567_P001	Maize	cytosol	12.5	43.64
Zm00001d000399_P001	Maize	plastid	43.23	42.64
Zm00001d054089_P002	Maize	plastid	45.66	42.63
Zm00001d031503_P001	Maize	endoplasmic reticulum	8.85	41.13
Zm00001d028409_P001	Maize	plastid	38.89	38.1
Zm00001d053279_P001	Maize	mitochondrion	9.9	36.31
Zm00001d051252_P001	Maize	cytosol	12.5	35.12
Zm00001d046709_P001	Maize	mitochondrion	9.55	35.03
Zm00001d016540_P001	Maize	cytosol	6.08	33.65
Zm00001d037526_P001	Maize	plastid	9.72	31.64
Zm00001d005373_P001	Maize	plastid	39.93	19.15

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:542707	UniProt:A0A1R3MBV7
ProteinID:AAA33451.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EMBL:L21006	HAMAP:MF_00600
ProteinID:ONM06053.1	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
UniProt:Q43298	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI0000127749	EMBL:Z12115	EnsemblPlantsGene:Zm00001d032789	EnsemblPlants:Zm00001d032789_P001	EnsemblPlants:Zm00001d032789_T001	SEG:seg

Description

chaperonin2chaperonin2

Coordinates

chr1:-:238195329..238201192

Molecular Weight (calculated)

60938.7 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.071

Length

576 amino acids

Sequence
(BLAST)

001: MYRAAASLAS KARQAGSSSA ARQVGSRLAW SRNYAAKDIK FGVEARALML RGVEELADAV KVTMGPKGRN VVIEQSFGAP KVTKDGVTVA KSIEFKDRVK
101: NVGASLVKQV ANATNDTAGD GTTCATVLTK AIFTEGCKSV AAGMNAMDLR RGISMAVDAV VTNLKGMARM ISTSEEIAQV GTISANGERE IGELIAKAME
201: KVGKEGVITI ADGNTLYNEL EVVEGMKLDR GYISPYFITN SKAQKCELED PLILIHDKKV TNMHAVVKVL EMALKKQRPL LIVAEDVESE ALGTLIINKL
301: RAGIKVCAVK APGFGENRKA NLQDLAILTG GEVITEELGM NLENVEPHML GSCKKVTVSK DDTVILDGAG DKKSIEERAD QIRSAVENST SDYDKEKLQE
401: RLAKLSGGVA VLKIGGASEA EVGEKKDRVT DALNATKAAV EEGIVPGGGV ALLYASKELD KLQTANFDQK IGVQIIQNAL KTPVHTIASN AGVEGAVVVG
501: KLLEQGNTDL GYDAAKDEYV DMVKAGIIDP LKVIRTALVD AASVSSLMTT TESIIVEIPK EEAPAPAMGG MGGMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.