Factsheet for Zm00001d013912_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017567_P001	Maize	cytosol	25.0	19.39
Zm00001d032789_P001	Maize	plastid	71.09	15.8
Zm00001d014090_P002	Maize	mitochondrion	68.75	15.25
Zm00001d038857_P001	Maize	mitochondrion	43.75	9.66
Zm00001d053279_P001	Maize	mitochondrion	10.94	8.92
Zm00001d046709_P001	Maize	mitochondrion	10.94	8.92
Zm00001d035937_P001	Maize	plastid	36.72	8.12
Zm00001d037526_P001	Maize	plastid	10.94	7.91
Zm00001d034919_P001	Maize	plastid	35.94	7.88
Zm00001d045544_P002	Maize	plastid	36.72	7.83
Zm00001d000399_P001	Maize	plastid	35.16	7.71
Zm00001d028409_P001	Maize	plastid	35.16	7.65
Zm00001d054089_P002	Maize	plastid	36.72	7.62
Zm00001d016540_P001	Maize	cytosol	5.47	6.73
Zm00001d051252_P001	Maize	cytosol	10.16	6.34
Zm00001d005373_P001	Maize	plastid	32.03	3.41
KRH01342	Soybean	cytosol	2.34	1.88
Zm00001d031503_P001	Maize	endoplasmic reticulum	1.56	1.61

Protein Annotations

EnsemblPlants:Zm00001d013912_P001	EnsemblPlants:Zm00001d013912_T001	EnsemblPlantsGene:Zm00001d013912	Gene3D:3.50.7.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
ProteinID:AQK64802.1	SEG:seg	SUPFAM:SSF52029	UniParc:UPI0008426DAA	UniProt:A0A1D6GNK0	MapMan:35.1

Description

Chaperonin 60 subunit beta 2 chloroplastic

Coordinates

chr5:+:24516076..24518164

Molecular Weight (calculated)

14071.5 Da

IEP (calculated)

10.640

GRAVY (calculated)

-0.080

Length

128 amino acids

Sequence
(BLAST)

001: MVETRRSSAA ATGKRTSPSS SSSSVPSRSA PRMATPFIMS LKLWREPEDP LILIHDKKVT NMHAVVKVLE MALKKQRPLL IVAKDVESEV LGTLIINKLR
101: AGIKVIAEEL GMNLENVEPH MLGSCKKV

Best Arabidopsis Sequence Match ( AT2G33210.2 )
(BLAST)

001: MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMETV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA
301: NIKAPGFGEN RKANLHDLAA LTGAQVITEE LGMNLDNIDL SMFGNCKKVT VSKDDTVVLD GAGDKQAIGE RCEQIRSMVE ASTSDYDKEK LQERLAKLSG
401: GVAVLKIGGA SETEVSEKKD RVTDALNATK AAVEEGIVPG GGVALLYASK ELEKLSTANF DQKIGVQIIQ NALKTPVYTI ASNAGVEGAV VVGKLLEQDN
501: PDLGYDAAKG EYVDMIKAGI IDPLKVIRTA LVDAASVSSL LTTTEAVVTE IPTKEVASPG MGGGGMGGMG GMGGMGGMGF

Arabidopsis Description

HSP60-2Chaperonin CPN60-like 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7B5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.