Factsheet for Zm00001d045544_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20089766
plastid: 22065420
extracellular: 22192489
plastid: 23198870
plasma membrane: 23508561
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89076	Sorghum	plastid	95.5	98.96
Zm00001d035937_P001	Maize	plastid	95.17	98.62
Zm00001d017567_P001	Maize	cytosol	26.83	97.58
Os06t0114000-02	Rice	plastid	93.67	93.51
TraesCS4A01G452700.2	Wheat	plastid	89.67	92.12
HORVU7Hr1G006490.2	Barley	cytosol	83.83	90.79
Zm00001d016540_P001	Maize	cytosol	15.5	89.42
TraesCS7A01G036200.2	Wheat	golgi	91.83	88.87
TraesCS7D01G032800.1	Wheat	cytosol	92.0	87.76
Bra001507.1-P	Field mustard	plastid	85.33	86.78
CDX82537	Canola	plastid	84.67	86.54
GSMUA_Achr3P27620_001	Banana	plastid	88.0	86.27
CDX75715	Canola	cytosol	80.5	85.79
GSMUA_Achr9P23240_001	Banana	plastid	87.17	85.46
CDX75713	Canola	plastid	84.33	85.33
AT3G13470.1	Thale cress	plastid	84.17	84.73
VIT_06s0004g00240.t01	Wine grape	plastid	85.33	84.21
AT1G55490.3	Thale cress	plastid	84.17	84.17
KRH43861	Soybean	plastid	83.0	84.12
Solyc01g028810.2.1	Tomato	plastid	83.83	83.97
PGSC0003DMT400061700	Potato	extracellular	83.83	83.97
KRH13605	Soybean	nucleus	82.5	83.76
CDY08245	Canola	plastid	83.5	83.5
Zm00001d053279_P001	Maize	mitochondrion	21.83	83.44
Bra011919.1-P	Field mustard	plastid	83.83	82.73
CDY32855	Canola	plastid	81.83	82.66
VIT_09s0002g03930.t01	Wine grape	plastid	83.67	82.43
AT5G56500.2	Thale cress	plastid	82.0	82.41
Zm00001d046709_P001	Maize	mitochondrion	21.5	82.17
Bra028922.1-P	Field mustard	plastid	80.83	82.06
CDY11918	Canola	plastid	80.67	81.34
Zm00001d054089_P002	Maize	plastid	83.0	80.71
CDY26100	Canola	plastid	83.83	80.1
Solyc03g120850.2.1	Tomato	plastid	80.5	79.83
CDY36809	Canola	plastid	80.33	79.41
PGSC0003DMT400006501	Potato	plastid	80.0	79.34
Zm00001d037526_P001	Maize	plastid	22.33	75.71
Bra030858.1-P	Field mustard	cytosol	84.5	73.58
CDY02438	Canola	cytosol	84.0	72.31
CDX72433	Canola	endoplasmic reticulum	38.0	72.15
CDY32775	Canola	cytosol	10.0	70.59
CDY23605	Canola	cytosol	49.0	67.74
CDY10557	Canola	endoplasmic reticulum, plastid	85.0	61.52
CDY56074	Canola	plastid	47.83	60.42
Zm00001d028409_P001	Maize	plastid	58.67	59.86
CDY43988	Canola	cytosol	49.33	57.59
Bra027431.1-P	Field mustard	cytosol	49.5	57.23
CDY10302	Canola	extracellular	6.17	56.92
CDX86994	Canola	mitochondrion, plastid	57.17	48.86
Zm00001d000399_P001	Maize	plastid	47.0	48.29
Zm00001d034919_P001	Maize	plastid	46.83	48.12
Zm00001d014090_P002	Maize	mitochondrion	44.17	45.93
Zm00001d032789_P001	Maize	plastid	43.83	45.66
Zm00001d038857_P001	Maize	mitochondrion	41.5	42.93
CDY40825	Canola	endoplasmic reticulum, vacuole	15.0	42.25
Zm00001d031503_P001	Maize	endoplasmic reticulum	8.67	41.94
Zm00001d051252_P001	Maize	cytosol	12.83	37.56
Zm00001d013912_P001	Maize	mitochondrion	7.83	36.72
CDX85007	Canola	cytosol, plastid	42.67	25.5
Zm00001d005373_P001	Maize	plastid	39.17	19.57

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:542185	ProteinID:AQL02523.1	EMBL:BT067812	UniProt:C0PHP3	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF8	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000195CE68	EnsemblPlantsGene:Zm00001d045544	EnsemblPlants:Zm00001d045544_P002	EnsemblPlants:Zm00001d045544_T002	SEG:seg	:

Description

Chaperonin 60 subunit beta 2 chloroplastic

Coordinates

chr9:+:25951072..25956055

Molecular Weight (calculated)

64034.0 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.080

Length

600 amino acids

Sequence
(BLAST)

001: MCLLRSFSHA NVTPAAHAVE DMASTFGATS TVGLMAAPTG KNVRLQRRAN FRVKAAKELY FNKDGSAIKK LQTGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPKIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGLIAEGVK VVAAGANPVQ ITRGIEKTAK ALVEELRKLS KEVEDSELAD
201: VAAVSAGNNY EIGNMIAEAM SKVGRKGVVT LEEGKSSENF LYVVEGMQFD RGYISPYFVT DSEKMTAEYE NCKLLLVDKK ITNARDLINV LEEAIRGAYP
301: ILIIAEDIEQ EALATLVVNK LRGSLKIAAI KAPGFGERKT QYLDDIAILT GATVIRDEVG LSLDKADKSV LGTAAKVVLT KESTTIVGDG STQEEVTKRV
401: AQIKNLIEAA EQEYEKEKLN ERIAKLAGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLAAKV DAIKDTLEND EQKVGAEIVR
501: RALSYPLKLI AKNAGVNGSV VTEKVLSNDN FKYGYNAATG QYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLTSDVVVVD IKEPEAAPVA NPMDNSGYGY

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.