CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08245	Canola	plastid	95.06	99.5
AT1G55490.3	Thale cress	plastid	92.2	96.5
CDX82537	Canola	plastid	86.31	92.33
CDX75713	Canola	plastid	86.47	91.57
CDX75715	Canola	cytosol	79.3	88.45
Zm00001d035937_P001	Maize	plastid	80.25	87.05
KRH13605	Soybean	nucleus	81.53	86.63
EER89076	Sorghum	plastid	79.62	86.36
KRH43861	Soybean	plastid	81.21	86.15
PGSC0003DMT400061700	Potato	extracellular	81.85	85.81
Solyc01g028810.2.1	Tomato	plastid	81.85	85.81
TraesCS6B01G012000.1	Wheat	cytosol	55.57	84.91
CDY11918	Canola	plastid	80.25	84.71
HORVU7Hr1G006490.2	Barley	cytosol	74.68	84.66
CDY02438	Canola	cytosol	93.95	84.65
CDY32855	Canola	plastid	79.94	84.51
Os06t0114000-02	Rice	plastid	80.41	84.03
Zm00001d045544_P002	Maize	plastid	80.1	83.83
GSMUA_Achr3P27620_001	Banana	plastid	81.21	83.33
TraesCS4A01G452700.2	Wheat	plastid	77.39	83.22
GSMUA_Achr9P23240_001	Banana	plastid	81.05	83.17
CDY36809	Canola	plastid	80.25	83.03
HORVU4Hr1G076680.1	Barley	cytosol	25.96	82.32
HORVU5Hr1G074160.1	Barley	cytosol	25.32	81.54
TraesCS6A01G006400.1	Wheat	golgi	77.39	81.27
Os02t0102900-01	Rice	plastid	77.39	81.27
TraesCS6B01G011800.1	Wheat	plastid	76.11	80.61
TraesCS6D01G009100.1	Wheat	golgi	76.75	80.6
TraesCS6B01G012100.3	Wheat	plastid	76.91	80.5
HORVU2Hr1G107410.2	Barley	cytosol	25.64	80.5
KXG29249	Sorghum	plastid	77.39	80.46
TraesCS7A01G036200.2	Wheat	golgi	78.98	80.0
TraesCS7D01G032800.1	Wheat	cytosol	78.98	78.86
CDX72433	Canola	endoplasmic reticulum	39.65	78.8
Zm00001d054089_P002	Maize	plastid	76.43	77.8
Zm00001d016540_P001	Maize	cytosol	12.74	76.92
TraesCS6B01G039300.2	Wheat	plastid	72.29	75.92
TraesCS6A01G028100.1	Wheat	plastid	72.13	75.75
TraesCS6D01G031400.1	Wheat	plastid	71.82	75.42
CDY32775	Canola	cytosol	10.19	75.29
HORVU6Hr1G005220.3	Barley	plastid	71.5	75.08
Zm00001d053279_P001	Maize	mitochondrion	18.31	73.25
GSMUA_Achr11P...	Banana	plastid	80.57	72.7
Zm00001d046709_P001	Maize	mitochondrion	17.99	71.97
CDY10557	Canola	endoplasmic reticulum, plastid	93.63	70.93
CDY23605	Canola	cytosol	48.57	70.28
HORVU6Hr1G000180.2	Barley	plastid	71.97	69.43
HORVU4Hr1G066820.2	Barley	cytosol	25.96	69.36
CDY56074	Canola	plastid	51.91	68.63
Zm00001d037526_P001	Maize	plastid	18.63	66.1
CDY20555	Canola	plastid	59.71	61.78
CDY66193	Canola	plastid	59.39	61.45
CDY43988	Canola	cytosol	48.89	59.73
CDY10302	Canola	extracellular	6.05	58.46
CDX86994	Canola	mitochondrion, plastid	56.05	50.14
CDY68896	Canola	cytosol	26.75	49.85
CDX83280	Canola	plastid	45.38	48.97
CDY30514	Canola	plastid	45.38	48.72
CDY31190	Canola	plastid	45.38	48.63
CDY04527	Canola	plastid	45.54	47.99
CDX79518	Canola	cytosol	15.29	47.52
CDX71396	Canola	plastid	38.85	46.12
CDX77147	Canola	plastid	45.38	45.82
CDX94835	Canola	mitochondrion	41.4	45.06
CDX93002	Canola	mitochondrion	39.17	44.73
CDY47184	Canola	plastid	41.08	44.64
CDY02601	Canola	plastid	40.76	44.29
CDX84697	Canola	mitochondrion	39.65	44.23
CDY72107	Canola	mitochondrion	21.34	43.65
CDY17152	Canola	mitochondrion	39.65	43.38
CDY59050	Canola	cytosol	23.25	43.2
CDY19471	Canola	mitochondrion	40.45	42.83
CDX82514	Canola	mitochondrion	38.53	42.31
CDX75733	Canola	mitochondrion	38.38	42.13
CDY40825	Canola	endoplasmic reticulum, vacuole	13.85	40.85
CDY31193	Canola	plastid	15.29	40.51
CDY59049	Canola	mitochondrion	12.58	36.24
CDY66712	Canola	mitochondrion	33.92	35.32
CDY37741	Canola	mitochondrion	32.64	33.55
CDX85007	Canola	cytosol, plastid	44.9	28.09
CDY56079	Canola	plastid	4.46	20.9
Os02t0103100-01	Rice	plasma membrane, vacuole	0.16	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078GI33	UniProt:A0A078GI33	EnsemblPlants:CDY26100	ProteinID:CDY26100	ProteinID:CDY26100.1	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00034728001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EEE5BD	SEG:seg	:	:

Description

BnaC06g10960DBnaC06g10960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI33]

Coordinates

chrLK032185:+:228544..232019

Molecular Weight (calculated)

67006.0 Da

IEP (calculated)

7.388

GRAVY (calculated)

-0.062

Length

628 amino acids

Sequence
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLMNKL SSSSFGRRQN VCPRLRRSSP AIVCAAKELH FNKDGTTIRK LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVAELKKMS KEVEDSELAD
201: VAAVSAGNNE EIGSMIAEAM SRVGRKGVVT LEEGKSAENA LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGHAAKVVLT KETSTIVGDG STQDAVQKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKAALEND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNEN VKYGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGLLR
601: HSYTVKSTKQ FIVPSLIIFT TIITGYGY

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.