CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034383.1-P	Field mustard	plastid	99.49	99.49
CDY68896	Canola	cytosol	56.92	98.81
CDX83280	Canola	plastid	97.61	98.11
CDY31190	Canola	plastid	97.95	97.78
CDY04527	Canola	plastid	97.09	95.3
AT2G28000.1	Thale cress	plastid	92.82	92.66
CDX77147	Canola	plastid	98.12	92.28
CDX71396	Canola	plastid	82.73	91.49
KRH25068	Soybean	nucleus	86.84	86.99
Solyc11g069790.1.1	Tomato	plastid	84.96	84.52
VIT_06s0061g00270.t01	Wine grape	plastid	83.93	83.79
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	83.76	83.33
Os03t0859600-01	Rice	plastid	44.1	82.69
GSMUA_Achr11P...	Banana	plastid	82.22	82.08
Os12t0277500-01	Rice	plastid	80.85	81.83
GSMUA_AchrUn_...	Banana	plastid	80.68	81.8
EES19317	Sorghum	plastid	80.17	81.28
Zm00001d000399_P001	Maize	plastid	80.68	80.82
EER90466	Sorghum	plastid	79.66	80.34
TraesCS2D01G049500.1	Wheat	golgi, plastid	79.32	80.28
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	79.32	80.28
CDY31193	Canola	plastid	32.48	80.17
KRH30612	Soybean	endoplasmic reticulum	80.68	79.6
TraesCS4A01G315500.2	Wheat	plastid	79.15	79.01
Zm00001d034919_P001	Maize	plastid	78.8	78.94
TraesCS5D01G550700.1	Wheat	plastid	79.32	78.91
HORVU5Hr1G125130.1	Barley	plastid	79.15	78.88
TraesCS5B01G563900.2	Wheat	plastid	79.15	78.74
Solyc06g075010.2.1	Tomato	plastid	78.8	78.27
PGSC0003DMT400031301	Potato	plastid	78.63	78.1
HORVU2Hr1G109400.1	Barley	cytosol	12.14	77.17
HORVU2Hr1G011340.1	Barley	cytosol	21.54	76.36
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	79.49	74.52
Os03t0859700-00	Rice	extracellular, plastid	22.39	70.81
Zm00001d051252_P001	Maize	cytosol	22.73	64.88
CDY47184	Canola	plastid	58.97	59.69
CDY02601	Canola	plastid	58.29	59.0
CDY11918	Canola	plastid	49.74	48.91
CDY32855	Canola	plastid	49.57	48.82
CDX75715	Canola	cytosol	46.15	47.96
CDY36809	Canola	plastid	49.57	47.78
CDX82537	Canola	plastid	47.69	47.53
CDY08245	Canola	plastid	48.72	47.5
CDX75713	Canola	plastid	48.03	47.39
CDY26100	Canola	plastid	48.72	45.38
CDX72433	Canola	endoplasmic reticulum	23.59	43.67
CDX94835	Canola	mitochondrion	41.71	42.29
CDY20555	Canola	plastid	43.59	42.01
CDY66193	Canola	plastid	43.42	41.85
CDX93002	Canola	mitochondrion	39.32	41.82
CDY19471	Canola	mitochondrion	42.22	41.65
CDY59050	Canola	cytosol	23.93	41.42
CDY17152	Canola	mitochondrion	40.0	40.77
CDY72107	Canola	mitochondrion	21.37	40.72
CDY02438	Canola	cytosol	48.38	40.6
CDX79518	Canola	cytosol	14.02	40.59
CDY23605	Canola	cytosol	30.09	40.55
CDX84697	Canola	mitochondrion	38.97	40.5
CDX82514	Canola	mitochondrion	39.32	40.21
CDX75733	Canola	mitochondrion	39.15	40.03
CDY56074	Canola	plastid	29.74	36.63
CDY59049	Canola	mitochondrion	13.33	35.78
CDY43988	Canola	cytosol	30.94	35.21
CDY10557	Canola	endoplasmic reticulum, plastid	48.21	34.02
CDY66712	Canola	mitochondrion	34.53	33.5
CDY40825	Canola	endoplasmic reticulum, vacuole	12.14	33.33
CDY32775	Canola	cytosol	4.79	32.94
CDY37741	Canola	mitochondrion	32.31	30.93
CDY10302	Canola	extracellular	3.08	27.69
CDX86994	Canola	mitochondrion, plastid	31.97	26.64
CDY56079	Canola	plastid	4.62	20.15
CDX85007	Canola	cytosol, plastid	27.52	16.04

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078GZH9	UniProt:A0A078GZH9	EnsemblPlants:CDY30514	ProteinID:CDY30514	ProteinID:CDY30514.1	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
EnsemblPlantsGene:GSBRNA2T00045232001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EED78F	SEG:seg

Description

BnaA04g16190DBnaA04g16190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZH9]

Coordinates

chrLK032254:-:168677..171355

Molecular Weight (calculated)

61837.4 Da

IEP (calculated)

4.871

GRAVY (calculated)

0.003

Length

585 amino acids

Sequence
(BLAST)

001: MASANSLSSA SVLCSSRQRK LSGGTQQKGQ RVSYKKANRR FSVRANVKEI SFDQSSRAAL QAGIDKLADA VGLTLGPRGR NVVLDEFGSP KVVNDGVTIA
101: RAIELPDAME NAGAALIREV ASKTNDSAGD GTTTASVLAR EIIKHGLLSV TSGANPVSLK RGIDKTVQAL IEELEKRARP VKGGSDIKAV ATISAGNDEL
201: VGTMIADAID KVGPDGVLSI ESSSSFETTV EVEEGMEIDR GYISPQFVTN PEKLLVEFEN ARVLITDQKI TAIKDIIPIL EKTTQLRAPL LIIAEDVTGE
301: ALATLVVNKL RGVLNVVAVK APGFGERRKA MLQDIAILTG AEYQALDMGL LVENTTIEQL GIARKVTISK DSTTLIADAA SKDELQARIS QLKKELSETD
401: SVYDSEKLAE RIAKLSGGVA VIKVGAATET ELEDRKLRIE DAKNATFAAI EEGIVPGGGA TLVHLSTVIP AIKEKLEDAD ERLAADIVQK ALVAPAALIA
501: QNAGIEGEVV VEKIMFSEWE IGYNAMTDTY ENLLEAGVID PAKVTRCALQ NAASVAGMVL TTQAIVVDKP KPKAPAAAAP QGLMV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.