Factsheet for Solyc06g075010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031301	Potato	plastid	97.62	97.62
Solyc11g069790.1.1	Tomato	plastid	82.68	82.82
VIT_06s0061g00270.t01	Wine grape	plastid	80.65	81.06
Bra000498.1-P	Field mustard	mitochondrion	72.84	80.19
GSMUA_Achr11P...	Banana	plastid	79.29	79.69
CDY68896	Canola	cytosol	45.5	79.53
CDX83280	Canola	plastid	77.93	78.87
Bra034383.1-P	Field mustard	plastid	78.27	78.8
CDY30514	Canola	plastid	78.27	78.8
CDY31190	Canola	plastid	77.76	78.16
KRH25068	Soybean	nucleus	77.42	78.08
Bra011985.1-P	Field mustard	plastid	77.42	77.95
AT2G28000.1	Thale cress	plastid	77.25	77.65
Os03t0859600-01	Rice	plastid	41.09	77.56
Os12t0277500-01	Rice	plastid	75.72	77.16
GSMUA_AchrUn_...	Banana	plastid	75.38	76.95
CDY04527	Canola	plastid	77.42	76.51
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	75.04	76.47
EES19317	Sorghum	plastid	74.7	76.26
TraesCS2D01G049500.1	Wheat	golgi, plastid	74.7	76.12
TraesCS5D01G550700.1	Wheat	plastid	75.72	75.85
HORVU5Hr1G125130.1	Barley	plastid	75.55	75.81
TraesCS4A01G315500.2	Wheat	plastid	75.38	75.77
Zm00001d000399_P001	Maize	plastid	75.04	75.68
TraesCS5B01G563900.2	Wheat	plastid	75.55	75.68
EER90466	Sorghum	plastid	73.68	74.83
CDX77147	Canola	plastid	78.44	74.28
Zm00001d034919_P001	Maize	plastid	73.34	73.97
HORVU2Hr1G109400.1	Barley	cytosol	11.54	73.91
CDX71396	Canola	plastid	66.21	73.72
KRH30612	Soybean	endoplasmic reticulum	72.84	72.34
HORVU2Hr1G011340.1	Barley	cytosol	19.86	70.91
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	75.04	70.83
Os03t0859700-00	Rice	extracellular, plastid	21.05	67.03
Solyc02g068730.2.1	Tomato	plastid	58.74	59.35
Zm00001d051252_P001	Maize	cytosol	20.37	58.54
Solyc01g028810.2.1	Tomato	plastid	47.37	46.58
Solyc03g120850.2.1	Tomato	plastid	46.69	45.45
Solyc05g010240.2.1	Tomato	plastid	39.73	43.25
Solyc05g053470.2.1	Tomato	plastid	41.94	43.11
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	41.77	42.49
Solyc03g121640.2.1	Tomato	plastid	38.2	39.27

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K4C9L7	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	EnsemblPlantsGene:Solyc06g075010.2	EnsemblPlants:Solyc06g075010.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000276697D
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:46537797..46542431

Molecular Weight (calculated)

62252.1 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.006

Length

589 amino acids

Sequence
(BLAST)

001: MASANGMSTA SILSSSSKQV GLKGRRVNQL QGQKFNNKAS KSRLVVRANA KDIAFDQKSR AALQAGIDKL VNVVGVTLGP RGRNVVLDEY DTPKVVNDGV
101: TIARAIELAD AMENAGATLI REVASLTNDA AGDGTTTASV LAREIIKHGL LSVTSGANPV SLKRGIDKTV NALVAMLERR ARPVKGRDDI KAIASISAGN
201: DDEIGTMIAD AIDKVGPDGV LSIESSSSFE TTVRVEEGME IDKGYISPQF ITNQEKLVVE FENARVLVTD HDISAIKDIM PLLEKATQLR APLLIIAGEV
301: TGEALATLIV NKLRGILNVA AIRAPGFGQR RKALLQDIAI VTGAEYQAAD LCMPVESTPV EALGFARKVT ITKDSTTILA DDVSKDEIQA RISQIKKELD
401: MSESVSDSEK LSERIAKLSG GVAVIKVGAA TEAELEDRKL RIEDAKNATF AAIEEGIVPG GGAALVHLSN YVPAIKDNLE DPDEKLGADI VQKALVAPAS
501: LIAQNAGVEG EVVVEKIKGS KWKMGYNAMT DKYEDLVEAG VIDPAMVTRC ALQNAASVAG MVLTTQAIVV DKKMPSAPAF APPQGLPMM

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.