Factsheet for Bra000498.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68896	Canola	cytosol	62.99	100.0
CDX83280	Canola	plastid	98.32	90.38
CDY31190	Canola	plastid	97.94	89.42
Bra034383.1-P	Field mustard	plastid	97.57	89.23
Bra011985.1-P	Field mustard	plastid	96.64	88.38
AT2G28000.1	Thale cress	plastid	92.9	84.81
Os03t0859600-01	Rice	plastid	47.85	82.05
KRH25068	Soybean	nucleus	88.97	81.51
Solyc11g069790.1.1	Tomato	plastid	86.73	78.91
VIT_06s0061g00270.t01	Wine grape	plastid	86.17	78.67
GSMUA_AchrUn_...	Banana	plastid	84.67	78.51
GSMUA_Achr11P...	Banana	plastid	85.79	78.33
HORVU2Hr1G109400.1	Barley	cytosol	13.46	78.26
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	85.79	78.06
Os12t0277500-01	Rice	plastid	84.3	78.03
EES19317	Sorghum	plastid	83.93	77.82
HORVU2Hr1G011340.1	Barley	cytosol	23.93	77.58
EER90466	Sorghum	plastid	83.36	76.9
Zm00001d000399_P001	Maize	plastid	83.93	76.88
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	82.8	76.64
TraesCS2D01G049500.1	Wheat	golgi, plastid	82.8	76.64
TraesCS4A01G315500.2	Wheat	plastid	82.62	75.43
Zm00001d034919_P001	Maize	plastid	82.24	75.34
TraesCS5D01G550700.1	Wheat	plastid	82.8	75.34
HORVU5Hr1G125130.1	Barley	plastid	82.62	75.3
TraesCS5B01G563900.2	Wheat	plastid	82.62	75.17
KRH30612	Soybean	endoplasmic reticulum	82.62	74.54
PGSC0003DMT400031301	Potato	plastid	80.19	72.84
Solyc06g075010.2.1	Tomato	plastid	80.19	72.84
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	82.99	71.15
Zm00001d051252_P001	Maize	cytosol	25.05	65.37
Os03t0859700-00	Rice	extracellular, plastid	21.31	61.62
Bra023694.1-P	Field mustard	plastid	61.68	57.09
Bra028922.1-P	Field mustard	plastid	52.52	47.55
Bra001507.1-P	Field mustard	plastid	51.03	46.27
Bra011919.1-P	Field mustard	plastid	51.22	45.07
Bra001934.1-P	Field mustard	mitochondrion	44.11	40.9
Bra012462.1-P	Field mustard	plastid	45.42	40.03
Bra030858.1-P	Field mustard	cytosol	51.22	39.77
Bra005514.1-P	Field mustard	mitochondrion	40.37	38.64
Bra001524.1-P	Field mustard	mitochondrion	40.93	38.29
Bra022931.1-P	Field mustard	mitochondrion	39.07	37.52
Bra027431.1-P	Field mustard	cytosol	33.46	34.49
Bra021836.1-P	Field mustard	cytosol	27.29	32.66

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EnsemblPlantsGene:Bra000498	EnsemblPlants:Bra000498.1	EnsemblPlants:Bra000498.1-P	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M4C8H0	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000253FFB8	SEG:seg	:	:	:	:

Description

AT2G28000 (E=3e-254) CPN60A, CH-CPN60A, SLP | CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding

Coordinates

chrA03:-:11446001..11448022

Molecular Weight (calculated)

56640.5 Da

IEP (calculated)

4.581

GRAVY (calculated)

0.077

Length

535 amino acids

Sequence
(BLAST)

001: MLRKSLSTRA QELLFKLADA VGLTLGPRGR NVVLDEFGSP KVVNDGVTIA RAIELPDAME NAGAALIREV ASKTNDSAGD GTTTASVLAR EIIKHGLLSV
101: TSGANPVSLK RGIDKTVQAL IEELEKKARP VKGGSDIKAV ATISAGNDEL VGTMIADAID KVGPDGVLSI ESSSSFETTV EVEEGMEIDR GYISPQFVTN
201: PEKLLVEFEN ARVLITDQKI TAIKDIIPIL EKTTQLRAPL LIIAEDVTGE ALATLVVNKL RGVLNVVAVK APGFGERRKA MLQDIAILTG AEYQALDMGL
301: LVENTTIDQL GIARKVTISK DSTTLIADAA SKDELQARIS QLKKELFETD SVYDSEKLAE RIAKLSGGVA VIKVGAATET ELEDRKLRIE DAKNATFAAI
401: EEGIVPGGGA TLVHLSTVIP AIKEKLEDAD ERLGADIVQK ALVAPAALIA QNAGIEGEVV VEKIMFSEWE IGYNAMTDTY ENLLEAGVID PAKVTRCALQ
501: NAASVAGMVL TTQAIVVDKP KPKAPAAAPP QGLMV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.