Factsheet for PGSC0003DMT400002933

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069790.1.1	Tomato	plastid	98.13	98.13
VIT_06s0061g00270.t01	Wine grape	plastid	86.39	86.69
Bra000498.1-P	Field mustard	mitochondrion	78.06	85.79
KRH25068	Soybean	nucleus	84.52	85.1
CDY68896	Canola	cytosol	48.47	84.57
CDX83280	Canola	plastid	83.16	84.02
Os03t0859600-01	Rice	plastid	44.56	83.97
GSMUA_Achr11P...	Banana	plastid	83.67	83.96
Bra034383.1-P	Field mustard	plastid	83.5	83.93
CDY30514	Canola	plastid	83.33	83.76
Bra011985.1-P	Field mustard	plastid	83.33	83.76
CDY31190	Canola	plastid	83.16	83.45
AT2G28000.1	Thale cress	plastid	82.99	83.28
Os12t0277500-01	Rice	plastid	81.63	83.05
GSMUA_AchrUn_...	Banana	plastid	81.46	83.02
EES19317	Sorghum	plastid	81.46	83.02
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	81.29	82.7
PGSC0003DMT400031301	Potato	plastid	82.82	82.68
TraesCS2D01G049500.1	Wheat	golgi, plastid	81.12	82.53
CDY04527	Canola	plastid	83.16	82.05
Zm00001d000399_P001	Maize	plastid	81.46	82.02
EER90466	Sorghum	plastid	78.91	80.0
CDX71396	Canola	plastid	71.77	79.77
TraesCS5D01G550700.1	Wheat	plastid	79.59	79.59
HORVU5Hr1G125130.1	Barley	plastid	79.42	79.56
TraesCS4A01G315500.2	Wheat	plastid	79.25	79.52
TraesCS5B01G563900.2	Wheat	plastid	79.42	79.42
Zm00001d034919_P001	Maize	plastid	78.4	78.94
KRH30612	Soybean	endoplasmic reticulum	79.25	78.58
CDX77147	Canola	plastid	82.82	78.3
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	80.95	76.28
HORVU2Hr1G011340.1	Barley	cytosol	21.26	75.76
HORVU2Hr1G109400.1	Barley	cytosol	11.39	72.83
Os03t0859700-00	Rice	extracellular, plastid	22.45	71.35
Zm00001d051252_P001	Maize	cytosol	23.13	66.34
PGSC0003DMT400027020	Potato	cytosol	56.46	61.94
PGSC0003DMT400061700	Potato	extracellular	47.62	46.74
PGSC0003DMT400006501	Potato	plastid	47.79	46.45
PGSC0003DMT400064673	Potato	cytosol	33.33	43.46
PGSC0003DMT400030265	Potato	mitochondrion	42.35	43.3
PGSC0003DMT400069855	Potato	mitochondrion	41.33	42.41
PGSC0003DMT400006642	Potato	cytosol	35.71	41.1

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:102594819	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0ZKX1	HAMAP:MF_00600	PFAM:PF00118
EnsemblPlantsGene:PGSC0003DMG400001148	PGSC:PGSC0003DMG400001148	EnsemblPlants:PGSC0003DMT400002933	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000296432D	RefSeq:XP_006340213.1	SEG:seg	:	:	:

Description

RuBisCO large subunit-binding protein subunit alpha, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400001148]

Coordinates

chr11:+:41838907..41844146

Molecular Weight (calculated)

61901.7 Da

IEP (calculated)

5.105

GRAVY (calculated)

0.016

Length

588 amino acids

Sequence
(BLAST)

001: MASANAISTA SIIPSPSKQG GLKNRKVSQL QGQRFGNKGA KNRFVVKACA KEIAFDQKSR SALQAGIDKL ADAVGLTLGP RGRNVVLDEY GTPKVVNDGV
101: TIARAIELPD AMENAGAALI REVASKTNDS AGDGTTTASV LAREIIKLGL LSVTSGANPV SLKRGIDKTV LGLIEELEKK ARPVKGRDDI KAIASISAGN
201: DESIGTMIAD AIDKVGPDGV LSIESSSSLE TTVHVEEGME IDRGYISPQF VTNSEKLIAE FENARVLVTD QKISAIKDII PLLEKTTQLR APLLIIAEDI
301: TGEALATLVV NKLRGILNVA AIKAPGFGER RKALLQDIAI VTGAEYQATD LGLLVENTPV EALGIARKVT ITKDSTTIIA DAASKDEIQS RIAQLKKELF
401: ETDSVYDSEK LAERIAKLSG GVAVIKVGAA TEAELEDRKL RIEDAKNATF AAIEEGIVPG GGAAFVHLST YVPAIKAKIE DPDERLGADI IQKALVAPAS
501: LIAQNAGVEG EVVVEKVKEA KWEMGYNAMT DIYENLVDAG VIDPAKVIRC ALQNSASVAG MVLTTQAIVV EKAKPKVAAP AAPQGLQV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.