Factsheet for HORVU5Hr1G125130.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G550700.1	Wheat	plastid	99.32	99.15
TraesCS4A01G315500.2	Wheat	plastid	98.81	98.98
TraesCS5B01G563900.2	Wheat	plastid	98.98	98.81
Os03t0859600-01	Rice	plastid	48.89	91.99
EER90466	Sorghum	plastid	88.59	89.66
Zm00001d034919_P001	Maize	plastid	88.08	88.53
Os03t0859700-00	Rice	extracellular, plastid	26.92	85.41
GSMUA_Achr11P...	Banana	plastid	82.79	82.94
Bra000498.1-P	Field mustard	mitochondrion	75.3	82.62
GSMUA_AchrUn_...	Banana	plastid	80.92	82.32
KRH25068	Soybean	nucleus	81.77	82.19
CDY68896	Canola	cytosol	46.68	81.31
VIT_06s0061g00270.t01	Wine grape	plastid	81.09	81.23
Solyc11g069790.1.1	Tomato	plastid	80.07	79.93
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	79.56	79.42
CDX83280	Canola	plastid	78.71	79.38
Bra034383.1-P	Field mustard	plastid	79.05	79.32
CDY30514	Canola	plastid	78.88	79.15
CDY31190	Canola	plastid	78.53	78.67
Bra011985.1-P	Field mustard	plastid	78.19	78.46
HORVU2Hr1G011340.1	Barley	cytosol	21.98	78.18
CDY04527	Canola	plastid	78.53	77.35
AT2G28000.1	Thale cress	plastid	77.17	77.3
HORVU2Hr1G109400.1	Barley	cytosol	12.1	77.17
KRH30612	Soybean	endoplasmic reticulum	76.83	76.05
Solyc06g075010.2.1	Tomato	plastid	75.81	75.55
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	80.07	75.32
PGSC0003DMT400031301	Potato	plastid	75.3	75.04
CDX71396	Canola	plastid	66.95	74.29
CDX77147	Canola	plastid	78.71	74.28
HORVU0Hr1G038830.17	Barley	plastid	56.73	56.44
HORVU4Hr1G076680.1	Barley	cytosol	17.21	51.01
HORVU2Hr1G107410.2	Barley	cytosol	17.21	50.5
HORVU7Hr1G006490.2	Barley	cytosol	46.68	49.46
HORVU5Hr1G074160.1	Barley	cytosol	16.35	49.23
HORVU6Hr1G005220.3	Barley	plastid	49.06	48.16
HORVU4Hr1G066820.2	Barley	cytosol	17.55	43.83
HORVU6Hr1G000180.2	Barley	plastid	46.17	41.63
HORVU2Hr1G077410.18	Barley	plastid	41.57	41.08
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	40.37	40.79
HORVU4Hr1G078820.3	Barley	plastid	43.1	40.1
HORVU1Hr1G038680.8	Barley	mitochondrion	42.76	37.52
HORVU4Hr1G071510.2	Barley	cytosol	24.19	19.94

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EMBL:AK362432	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	UniProt:F2DEW5
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	EnsemblPlantsGene:HORVU5Hr1G125130	EnsemblPlants:HORVU5Hr1G125130.1	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF179	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI0002006136	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DEW5]

Coordinates

chrchr5H:-:668105367..668109110

Molecular Weight (calculated)

61707.1 Da

IEP (calculated)

5.104

GRAVY (calculated)

-0.042

Length

587 amino acids

Sequence
(BLAST)

001: MATIPTTGSA LLRGSAALQR DGRSTRGRPS SAARPLPGRR TRSVVRASAK DIAFDQASRS ALQAGVEKLA AAVGVTLGPR GRNVVLDEFG SPKVVNDGVT
101: IARAIELADP MENAGAALIR EVASKTNDSA GDGTTTASVL AREIIKLGLL SVTSGANPVS IKKGIDKTVQ SLVEELEKKS RPVKGSGDIK AIAAISAGND
201: DFIGTMIAEA INKVGPDGVL SIESSSSFET TVEVEEGMEI DRGYISPQFV TNSEKSVVEF ENARVLVTDQ KISSIKEILP LLEQTTQLRA PLLIIAEDVS
301: GEALATLVVN KLRGILNVAA IKAPGFGERR KALLQDIAIV TGAEFQAKDL GQLIEQTTVE QLGIARKVTI SGSSTTIIAD VATKDEIQAR VAQLKRELSQ
401: TDSTYDSEKL AERIAKLSGG VAVIKVGAAT ETELEDRKLR IEDAKNATFA AIEEGIVPGG GAAYVHLSTF VPAIKEKLDD PEERLGADII QKALVAPASL
501: IAHNAGVEGE VIVEKIKDSE WEFGYNAMTD KHENLVEAGV IDPAKVTRCA LQNAASVAGM VLTTQAIVVE KPSKKAPAPA GMPQGMM

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.