Factsheet for PGSC0003DMT400031301

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075010.2.1	Tomato	plastid	97.62	97.62
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	82.68	82.82
VIT_06s0061g00270.t01	Wine grape	plastid	80.65	81.06
Bra000498.1-P	Field mustard	mitochondrion	72.84	80.19
CDY68896	Canola	cytosol	45.67	79.82
GSMUA_Achr11P...	Banana	plastid	78.95	79.35
CDX83280	Canola	plastid	77.76	78.69
Bra034383.1-P	Field mustard	plastid	78.1	78.63
CDY30514	Canola	plastid	78.1	78.63
KRH25068	Soybean	nucleus	77.42	78.08
CDY31190	Canola	plastid	77.59	77.99
Bra011985.1-P	Field mustard	plastid	77.25	77.78
AT2G28000.1	Thale cress	plastid	77.08	77.47
Os03t0859600-01	Rice	plastid	40.92	77.24
Os12t0277500-01	Rice	plastid	75.55	76.99
GSMUA_AchrUn_...	Banana	plastid	74.87	76.43
CDY04527	Canola	plastid	77.25	76.34
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	74.7	76.12
EES19317	Sorghum	plastid	74.36	75.91
TraesCS2D01G049500.1	Wheat	golgi, plastid	74.36	75.78
Zm00001d000399_P001	Maize	plastid	74.87	75.51
TraesCS5D01G550700.1	Wheat	plastid	75.21	75.34
HORVU5Hr1G125130.1	Barley	plastid	75.04	75.3
TraesCS4A01G315500.2	Wheat	plastid	74.87	75.26
TraesCS5B01G563900.2	Wheat	plastid	75.04	75.17
EER90466	Sorghum	plastid	73.34	74.48
CDX77147	Canola	plastid	78.27	74.12
HORVU2Hr1G109400.1	Barley	cytosol	11.54	73.91
CDX71396	Canola	plastid	66.04	73.53
Zm00001d034919_P001	Maize	plastid	72.84	73.46
KRH30612	Soybean	endoplasmic reticulum	73.01	72.51
HORVU2Hr1G011340.1	Barley	cytosol	19.86	70.91
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	74.7	70.51
Os03t0859700-00	Rice	extracellular, plastid	20.54	65.41
PGSC0003DMT400027020	Potato	cytosol	54.16	59.51
Zm00001d051252_P001	Maize	cytosol	20.54	59.02
PGSC0003DMT400061700	Potato	extracellular	46.69	45.91
PGSC0003DMT400006501	Potato	plastid	46.52	45.29
PGSC0003DMT400064673	Potato	cytosol	32.94	43.02
PGSC0003DMT400030265	Potato	mitochondrion	41.94	42.96
PGSC0003DMT400069855	Potato	mitochondrion	41.43	42.58
PGSC0003DMT400006642	Potato	cytosol	35.82	41.29

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:102587813	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1AVG8	HAMAP:MF_00600
PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400011997	PGSC:PGSC0003DMG400011997	EnsemblPlants:PGSC0003DMT400031301	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02348	UniParc:UPI00029618A5	RefSeq:XP_006347191.1	SEG:seg	:	:

Description

CPN60A [Source:PGSC_GENE;Acc:PGSC0003DMG400011997]

Coordinates

chr6:-:55568679..55573501

Molecular Weight (calculated)

62473.4 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.022

Length

589 amino acids

Sequence
(BLAST)

001: MASANGISTA SILLSSSKQV GLKERRVNQL QRQKFNNKAS KSRLVVRANA KDIAFDQKSR AALQAGIDKL VNVVGLTLGP KGRNVVLDDY DTPKVVNDGV
101: TIARAIELAD AMENAGATLI REVASLTNDA AGDGTTTASV LAREIIKHGL LSVTSGANPV SLKRGIDKTV NALVAMLERR ARPVKGRDDI KAIASISAGN
201: DDEIGTMIAD AIDKVGPDGV LSIESSSSFE TTVRVEEGME IDKGYISPQF ITNQEKLVVE FENARVLVTD YDISAIKDIM PLLEKATQLR APLLIIAGEV
301: TGEALATLIV NKLRGILNVA AIRAPGFGQR RKALLQDIAI VTGAEYQAAD LCMPVENTPV EALGFARKVT ITKDSTTILA DDVSKDEIQA RISQIKKELD
401: KSESVSDSEK LSERIAKLSG GVAVIKVGAA TEAELEDRKL RIEDAKNATF AAIEEGIVPG GGAALVHLSN NVPAIKDNLE DPDEKLGADI VQKALVAPAS
501: LIAQNAGVEG EVVVEKIKAS KWRMGYNAMT DKYEDLVEAG VIDPAMVTRC ALQNAASVAG MVLTTQAIVV DKKMPNAPAF APPQGLPMM

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.