Factsheet for Zm00001d000399_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19317	Sorghum	plastid	94.69	95.84
Os12t0277500-01	Rice	plastid	92.12	93.08
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	88.87	89.79
TraesCS2D01G049500.1	Wheat	golgi, plastid	88.53	89.45
GSMUA_Achr11P...	Banana	plastid	84.42	84.13
Bra000498.1-P	Field mustard	mitochondrion	76.88	83.93
HORVU2Hr1G109400.1	Barley	cytosol	13.18	83.7
HORVU2Hr1G011340.1	Barley	cytosol	23.63	83.64
CDY68896	Canola	cytosol	47.95	83.09
VIT_06s0061g00270.t01	Wine grape	plastid	83.22	82.94
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	88.36	82.69
GSMUA_AchrUn_...	Banana	plastid	81.68	82.67
KRH25068	Soybean	nucleus	82.02	82.02
Solyc11g069790.1.1	Tomato	plastid	82.36	81.8
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	82.02	81.46
CDX83280	Canola	plastid	81.16	81.44
Bra011985.1-P	Field mustard	plastid	81.51	81.37
AT2G28000.1	Thale cress	plastid	81.34	81.06
Bra034383.1-P	Field mustard	plastid	81.16	81.03
CDY31190	Canola	plastid	80.99	80.72
CDY30514	Canola	plastid	80.82	80.68
CDY04527	Canola	plastid	81.68	80.03
Zm00001d034919_P001	Maize	plastid	79.45	79.45
Zm00001d051252_P001	Maize	cytosol	27.4	78.05
CDX77147	Canola	plastid	81.51	76.53
CDX71396	Canola	plastid	68.66	75.8
Solyc06g075010.2.1	Tomato	plastid	75.68	75.04
KRH30612	Soybean	endoplasmic reticulum	76.2	75.04
PGSC0003DMT400031301	Potato	plastid	75.51	74.87
Zm00001d031503_P001	Maize	endoplasmic reticulum	14.9	70.16
Zm00001d017567_P001	Maize	cytosol	14.21	50.3
Zm00001d035937_P001	Maize	plastid	48.46	48.88
Zm00001d045544_P002	Maize	plastid	48.29	47.0
Zm00001d054089_P002	Maize	plastid	47.6	45.06
Zm00001d053279_P001	Maize	mitochondrion	11.99	44.59
Zm00001d032789_P001	Maize	plastid	42.64	43.23
Zm00001d014090_P002	Maize	mitochondrion	42.47	42.98
Zm00001d046709_P001	Maize	mitochondrion	11.47	42.68
Zm00001d028409_P001	Maize	plastid	41.44	41.16
Zm00001d016540_P001	Maize	cytosol	7.19	40.38
Zm00001d038857_P001	Maize	mitochondrion	39.21	39.48
Zm00001d037526_P001	Maize	plastid	11.82	38.98
Zm00001d013912_P001	Maize	mitochondrion	7.71	35.16
Zm00001d005373_P001	Maize	plastid	56.68	27.56

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
UniProt:A0A1X7YIG0	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00084326D9	EnsemblPlantsGene:Zm00001d000399	EnsemblPlants:Zm00001d000399_P001
EnsemblPlants:Zm00001d000399_T001	SEG:seg	:	:	:	:

Description

chloroplast protein synthesis2 chloroplast protein synthesis2

Coordinates

chrB73V4_ctg4:+:28493..32925

Molecular Weight (calculated)

61866.3 Da

IEP (calculated)

4.755

GRAVY (calculated)

0.003

Length

584 amino acids

Sequence
(BLAST)

001: MASANAISTA SLLRPLSQGR ATRSQRFVVR ANAKDIAFDQ KSRAALQAGV EKLANAVGVT LGPRGRNVVL DEYGNPKVVN DGVTIARAIE LYDPMENAGA
101: ALIREVASKT NDSAGDGTTT ASVLAREIIK LGLLSVTSGA NPVSLKKGID KTVQGLIQEL ENKSRPVKGG GDIKAVASIS AGNDEFIGSM IAEAIDKVGP
201: DGVLSIESSS SFETTVEVEE GMEIDRGYIS PQFVTNLEKS IVEFENAKVL ITDQKITSIK EILPILEKTT QLRAPLFIIA EDITGEALAT LVVNKLRGIL
301: NVAAIKAPSF GERRKAVLQD IAIVTVSFCL YRVSSLSGAE FLAKDLGLLV ENATEEQLGT ARKVTIHQTT TTLIADAASK DEIQARIAQL KKELAETDSV
401: YDTEKLAERI AKLAGGVAVI KVGAATETEL EDRQLRIEDA KNATFAAIEE GIVPGGGAAY VHLSTVVPKI KEAIEDPDER LGADIIQKAL VAPASLIAHN
501: AGVEGEVVVE KIKESDWEVG YNAMTDKYEN LMEAGVIDPA KVTRCALQNA ASVAGMVLTT QAIVVEKPKP KPQVAEPPEG ALTV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.