Factsheet for Zm00001d035937_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89076	Sorghum	plastid	98.62	98.62
Zm00001d017567_P001	Maize	cytosol	27.46	96.36
Zm00001d045544_P002	Maize	plastid	98.62	95.17
Os06t0114000-02	Rice	plastid	96.72	93.18
TraesCS4A01G452700.2	Wheat	plastid	92.57	91.78
HORVU7Hr1G006490.2	Barley	cytosol	86.87	90.79
Zm00001d016540_P001	Maize	cytosol	15.89	88.46
TraesCS7A01G036200.2	Wheat	golgi	94.65	88.39
TraesCS7D01G032800.1	Wheat	cytosol	94.82	87.28
Bra001507.1-P	Field mustard	plastid	88.43	86.78
CDX82537	Canola	plastid	87.74	86.54
GSMUA_Achr3P27620_001	Banana	plastid	90.85	85.95
CDX75715	Canola	cytosol	83.42	85.79
CDX75713	Canola	plastid	87.22	85.16
GSMUA_Achr9P23240_001	Banana	plastid	89.98	85.13
AT3G13470.1	Thale cress	plastid	87.22	84.73
AT1G55490.3	Thale cress	plastid	87.39	84.33
VIT_06s0004g00240.t01	Wine grape	plastid	88.26	84.05
CDY08245	Canola	plastid	86.87	83.83
Solyc01g028810.2.1	Tomato	plastid	86.7	83.81
PGSC0003DMT400061700	Potato	extracellular	86.7	83.81
KRH43861	Soybean	plastid	85.66	83.78
KRH13605	Soybean	nucleus	85.32	83.59
Zm00001d053279_P001	Maize	mitochondrion	22.63	83.44
Bra011919.1-P	Field mustard	plastid	86.87	82.73
CDY32855	Canola	plastid	84.63	82.49
VIT_09s0002g03930.t01	Wine grape	plastid	86.7	82.43
AT5G56500.2	Thale cress	plastid	84.8	82.24
Zm00001d046709_P001	Maize	mitochondrion	22.28	82.17
Bra028922.1-P	Field mustard	plastid	83.59	81.9
CDY11918	Canola	plastid	83.42	81.18
Zm00001d054089_P002	Maize	plastid	85.66	80.39
Solyc03g120850.2.1	Tomato	plastid	83.94	80.33
CDY26100	Canola	plastid	87.05	80.25
PGSC0003DMT400006501	Potato	plastid	83.42	79.83
CDY36809	Canola	plastid	83.07	79.24
Zm00001d037526_P001	Maize	plastid	23.14	75.71
Bra030858.1-P	Field mustard	cytosol	87.39	73.44
CDX72433	Canola	endoplasmic reticulum	39.72	72.78
CDY02438	Canola	cytosol	86.87	72.17
CDY32775	Canola	cytosol	10.54	71.76
CDY23605	Canola	cytosol	50.26	67.05
CDY10557	Canola	endoplasmic reticulum, plastid	86.7	60.55
CDY56074	Canola	plastid	49.4	60.21
Zm00001d028409_P001	Maize	plastid	60.79	59.86
CDY43988	Canola	cytosol	50.78	57.2
CDY10302	Canola	extracellular	6.39	56.92
Bra027431.1-P	Field mustard	cytosol	50.95	56.84
CDX86994	Canola	mitochondrion, plastid	59.24	48.86
Zm00001d000399_P001	Maize	plastid	48.88	48.46
Zm00001d034919_P001	Maize	plastid	48.53	48.12
Zm00001d014090_P002	Maize	mitochondrion	45.42	45.58
Zm00001d032789_P001	Maize	plastid	45.08	45.31
Zm00001d038857_P001	Maize	mitochondrion	42.83	42.76
Zm00001d031503_P001	Maize	endoplasmic reticulum	8.98	41.94
CDY40825	Canola	endoplasmic reticulum, vacuole	15.37	41.78
Zm00001d051252_P001	Maize	cytosol	13.47	38.05
Zm00001d013912_P001	Maize	mitochondrion	8.12	36.72
CDX85007	Canola	cytosol, plastid	44.04	25.4
Zm00001d005373_P001	Maize	plastid	40.07	19.32

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
UniProt:A0A1D6LJS9	ProteinID:AQK79984.1	ProteinID:AQK79985.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001B63C91
EnsemblPlantsGene:Zm00001d035937	EnsemblPlants:Zm00001d035937_P001	EnsemblPlants:Zm00001d035937_T001	SEG:seg	:	:

Description

Chaperonin 60 subunit beta 2 chloroplastic

Coordinates

chr6:-:61319459..61324306

Molecular Weight (calculated)

61854.4 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.099

Length

579 amino acids

Sequence
(BLAST)

001: MASTFGATST VGLMAAPTGK NVRLQRRVNF RVRAAKELYF NKDGSAIKKL QTGVNKLADL VGVTLGPKGR NVVLESKYGS PKIVNDGVTV AREVELEDPV
101: ENIGAKLVRQ AAAKTNDLAG DGTTTSVVLA QGLIAEGVKV VAAGANPVQI TRGIEKTAKA LVEELRKLSK EVEDSELADV AAVSAGNNYE IGNMIAEAMS
201: KVGRKGVVTL EEGRSSENFL YVVEGMQFDR GYISPYFVTD SEKMSAEYEN CKLLLVDKKI TNARDLINVL EEAIRGGYPI LIIAEDIEQE ALATLVVNKL
301: RGSLKIAAIK APGFGERKTQ YLDDIAILTG ATVIRDEVGL SLDKADKSVL GTAAKVVLTK ESTTIVGDGS TQDEVTKRVA QIKNLIEAAE QEYEKEKLNE
401: RIAKLAGGVA VIQVGAQTET ELKEKKLRVE DALNATKAAV EEGIVVGGGC TLLRLAAKVD AIKDTLENDE QKVGAEIVRR ALSYPLKLIA KNAGVNGSVV
501: TEKVLSNDNF KYGYNAATGQ YEDLMAAGII DPTKVVRCCL EHAASVAKTF LTSDVVVVDI KEPESAPLAN PMDNSGYGY

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.