CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13605	Soybean	nucleus	97.47	97.63
VIT_06s0004g00240.t01	Wine grape	plastid	90.54	88.16
AT3G13470.1	Thale cress	plastid	88.01	87.42
PGSC0003DMT400061700	Potato	extracellular	88.01	86.98
Solyc01g028810.2.1	Tomato	plastid	88.01	86.98
Bra001507.1-P	Field mustard	plastid	86.66	86.95
CDX82537	Canola	plastid	86.15	86.88
CDX75713	Canola	plastid	86.82	86.68
CDX75715	Canola	cytosol	82.26	86.5
TraesCS6B01G012000.1	Wheat	cytosol	59.63	85.89
Zm00001d035937_P001	Maize	plastid	83.78	85.66
AT1G55490.3	Thale cress	plastid	86.66	85.5
EER89076	Sorghum	plastid	83.61	85.49
AT5G56500.2	Thale cress	plastid	85.81	85.09
Bra028922.1-P	Field mustard	plastid	84.8	84.94
CDY32855	Canola	plastid	85.14	84.85
CDY08245	Canola	plastid	85.98	84.83
CDY11918	Canola	plastid	84.97	84.54
HORVU7Hr1G006490.2	Barley	cytosol	79.05	84.48
HORVU4Hr1G076680.1	Barley	cytosol	28.21	84.34
Bra011919.1-P	Field mustard	plastid	86.32	84.05
GSMUA_Achr9P23240_001	Banana	plastid	86.82	83.99
GSMUA_Achr3P27620_001	Banana	plastid	86.49	83.66
HORVU5Hr1G074160.1	Barley	cytosol	27.36	83.08
TraesCS4A01G452700.2	Wheat	plastid	81.93	83.05
HORVU2Hr1G107410.2	Barley	cytosol	28.04	83.0
Zm00001d045544_P002	Maize	plastid	84.12	83.0
Os06t0114000-02	Rice	plastid	83.78	82.53
CDY36809	Canola	plastid	84.46	82.37
TraesCS6A01G006400.1	Wheat	golgi	82.77	81.94
TraesCS6B01G011800.1	Wheat	plastid	81.93	81.79
Os02t0102900-01	Rice	plastid	82.43	81.61
TraesCS6D01G009100.1	Wheat	golgi	82.26	81.44
KXG29249	Sorghum	plastid	82.94	81.29
CDY26100	Canola	plastid	86.15	81.21
TraesCS6B01G012100.3	Wheat	plastid	81.59	80.5
TraesCS7A01G036200.2	Wheat	golgi	83.78	80.0
TraesCS7D01G032800.1	Wheat	cytosol	83.78	78.86
Zm00001d054089_P002	Maize	plastid	81.93	78.61
Zm00001d016540_P001	Maize	cytosol	13.51	76.92
TraesCS6B01G039300.2	Wheat	plastid	76.52	75.75
TraesCS6A01G028100.1	Wheat	plastid	76.35	75.59
TraesCS6D01G031400.1	Wheat	plastid	75.84	75.08
HORVU6Hr1G005220.3	Barley	plastid	75.68	74.92
Bra030858.1-P	Field mustard	cytosol	86.82	74.6
CDX72433	Canola	endoplasmic reticulum	39.36	73.73
CDY02438	Canola	cytosol	86.49	73.46
GSMUA_Achr11P...	Banana	plastid	85.64	72.84
Zm00001d053279_P001	Maize	mitochondrion	19.26	72.61
Zm00001d046709_P001	Maize	mitochondrion	18.92	71.34
HORVU6Hr1G000180.2	Barley	plastid	76.35	69.43
HORVU4Hr1G066820.2	Barley	cytosol	27.2	68.51
CDY23605	Canola	cytosol	50.17	68.43
Zm00001d037526_P001	Maize	plastid	19.76	66.1
KRH75202	Soybean	plastid	63.85	62.48
KRH71056	Soybean	plastid	63.85	62.48
CDY10557	Canola	endoplasmic reticulum, plastid	86.66	61.88
CDY56074	Canola	plastid	48.48	60.42
CDY43988	Canola	cytosol	51.01	58.75
Bra027431.1-P	Field mustard	cytosol	51.18	58.38
CDX86994	Canola	mitochondrion, plastid	58.28	49.15
KRH25068	Soybean	nucleus	48.14	48.8
KRH30612	Soybean	endoplasmic reticulum	45.95	45.87
KRG90277	Soybean	mitochondrion	44.26	45.57
KRH33513	Soybean	mitochondrion	44.26	45.57
KRH34594	Soybean	mitochondrion	44.09	45.23
KRG92192	Soybean	mitochondrion	43.58	44.87
KRH01342	Soybean	cytosol	11.82	43.75
CDY40825	Canola	endoplasmic reticulum, vacuole	15.71	43.66
KRH47114	Soybean	mitochondrion	42.23	43.55
KRG89369	Soybean	plastid	42.74	42.95
KRH44140	Soybean	mitochondrion	41.55	42.86
KRH50415	Soybean	plastid	42.4	42.76
Os02t0103100-01	Rice	plasma membrane, vacuole	0.34	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:100777674	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	UniProt:A0A0R0IU60	EMBL:ACUP02004898	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_08G175900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlants:KRH43861	ProteinID:KRH43861	ProteinID:KRH43861.1	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00018C6834	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:14045396..14049610

Molecular Weight (calculated)

62844.6 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.084

Length

592 amino acids

Sequence
(BLAST)

001: MASSSTFTAM SACKLSSSAA ISSFPSRRRS NAVVLSRRSR AARVSAMAKE LHFNKDGTAI KKLQSGVNKL ADLVGVTLGP KGRNVVLESK YGSPKIVNDG
101: VTVAKEVELE DPVENIGAKL VRQAAAKTND LAGDGTTTSV VLAQGLIAEG VKVVAAGANP VLITRGIEKT AKALVSELKQ MSKEVEDSEL ADVAAVSAGN
201: NYEVGNMIAE ALSRVGRKGV VTLEEGKSAD NSLYVVEGMQ FDRGYISPYF VTDSEKMAVE YENCKLLLVD KKITNARDLI NILEDAIRSG HPILIIAEDI
301: EQEALATLVV NKLRGSLKIA ALKAPGFGER KSQYLDDIAI LTGGTVIREE VGLTLDKAGK EVLGYASKVV LTKDTTTIVG DGSTQEAVNK RVAQIRNLIE
401: AAEQEYEKEK LNERIAKLSG GVAVIQVGAQ TETELKEKKL RVEDALNATK AAVEEGIVVG GGCTLLRLAS KVDAIKDSLD NDEEKVGADI VKRALSYPLK
501: LIAKNAGVNG SVVSEKVLSS DNPRYGYNAA TGKYEDLMSA GIIDPTKVVR CCLEHAASVA KTFLMSDCVV VEIKEPEAIP AGNPMDNSGY GL

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.