Factsheet for VIT_06s0004g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13605	Soybean	nucleus	88.16	90.69
KRH43861	Soybean	plastid	88.16	90.54
PGSC0003DMT400061700	Potato	extracellular	88.65	89.98
Solyc01g028810.2.1	Tomato	plastid	88.65	89.98
Bra001507.1-P	Field mustard	plastid	87.01	89.66
AT3G13470.1	Thale cress	plastid	87.66	89.43
VIT_09s0002g03930.t01	Wine grape	plastid	89.47	89.33
Zm00001d035937_P001	Maize	plastid	84.05	88.26
AT5G56500.2	Thale cress	plastid	86.35	87.94
EER89076	Sorghum	plastid	83.72	87.91
GSMUA_Achr9P23240_001	Banana	plastid	88.32	87.75
GSMUA_Achr3P27620_001	Banana	plastid	87.99	87.42
AT1G55490.3	Thale cress	plastid	86.18	87.33
Bra028922.1-P	Field mustard	plastid	84.05	86.46
TraesCS6B01G012000.1	Wheat	cytosol	58.22	86.13
Bra011919.1-P	Field mustard	plastid	86.02	86.02
Os06t0114000-02	Rice	plastid	84.87	85.86
TraesCS4A01G452700.2	Wheat	plastid	82.07	85.45
Zm00001d045544_P002	Maize	plastid	84.21	85.33
HORVU7Hr1G006490.2	Barley	cytosol	77.63	85.2
TraesCS6A01G006400.1	Wheat	golgi	82.07	83.44
HORVU4Hr1G076680.1	Barley	cytosol	27.14	83.33
TraesCS6B01G011800.1	Wheat	plastid	80.92	82.97
TraesCS6D01G009100.1	Wheat	golgi	81.25	82.61
TraesCS7A01G036200.2	Wheat	golgi	84.21	82.58
Os02t0102900-01	Rice	plastid	80.76	82.11
HORVU5Hr1G074160.1	Barley	cytosol	26.32	82.05
TraesCS6B01G012100.3	Wheat	plastid	80.76	81.83
KXG29249	Sorghum	plastid	81.25	81.79
HORVU2Hr1G107410.2	Barley	cytosol	26.81	81.5
TraesCS7D01G032800.1	Wheat	cytosol	84.21	81.4
Zm00001d054089_P002	Maize	plastid	80.1	78.93
Zm00001d016540_P001	Maize	cytosol	13.49	78.85
CDY32775	Canola	cytosol	11.02	78.82
TraesCS6A01G028100.1	Wheat	plastid	75.33	76.59
TraesCS6B01G039300.2	Wheat	plastid	75.0	76.25
HORVU6Hr1G005220.3	Barley	plastid	75.0	76.25
TraesCS6D01G031400.1	Wheat	plastid	75.0	76.25
Bra030858.1-P	Field mustard	cytosol	86.35	76.2
GSMUA_Achr11P...	Banana	plastid	87.17	76.15
Zm00001d053279_P001	Maize	mitochondrion	19.24	74.52
Zm00001d046709_P001	Maize	mitochondrion	18.91	73.25
HORVU6Hr1G000180.2	Barley	plastid	76.64	71.58
HORVU4Hr1G066820.2	Barley	cytosol	26.64	68.94
Zm00001d037526_P001	Maize	plastid	19.74	67.8
VIT_01s0010g00920.t01	Wine grape	mitochondrion	64.14	63.93
Bra027431.1-P	Field mustard	cytosol	50.0	58.57
CDY10302	Canola	extracellular	6.25	58.46
VIT_06s0061g00270.t01	Wine grape	plastid	47.53	49.32
VIT_05s0051g00340.t01	Wine grape	mitochondrion	45.72	48.35
VIT_01s0011g01680.t01	Wine grape	plastid	42.93	44.77
VIT_09s0002g02240.t01	Wine grape	mitochondrion	39.31	43.38
CDX85007	Canola	cytosol, plastid	45.89	27.79
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:100263832	wikigene:100263832	MapMan:19.1.7.1
Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:CBI16557	ProteinID:CBI16557.3	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	UniProt:D7SLM9	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100263832	wikigene:LOC100263832	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	TIGR:TC55206	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001983646	ArrayExpress:VIT_06s0004g00240
EnsemblPlantsGene:VIT_06s0004g00240	EnsemblPlants:VIT_06s0004g00240.t01	unigene:Vvi.4385	RefSeq:XP_002285746	RefSeq:XP_002285746.1	RefSeq:XP_010651396.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:369013..374661

Molecular Weight (calculated)

64611.7 Da

IEP (calculated)

5.737

GRAVY (calculated)

-0.094

Length

608 amino acids

Sequence
(BLAST)

001: MASAFTTMSS VGSLAAPGGR GMDKKLATSS DRLSSFASIS SSSFGRRQNV VLRRTRSPRI NAMAKDLYFN KDGSAIKKLQ TGVNKLADLV GVTLGPKGRN
101: VVLESKYGSP KIVNDGVTVA KEVELEDPVE NIGAKLVRQA AAKTNDLAGD GTTTSVVLAQ GLIAEGVKVV AAGANPVLIT RGIEKTTKSL VAELKLISKE
201: VEDSELADVA AVSAGNNHEV GNMIAEAMSK VGRKGVVTLE EGKSAENHLY VVEGMQFDRG YISPYFVTDS EKMAVEFENC KLLLVDKKIT NARDLINVLE
301: DAIRGGYPIL IIAEDIEQEA LATLVVNKLR GSLKIAALKA PGFGERKSQY LDDIAILTGG TVIRDEVGLT LDKAEKEVLG HAAKVVLTKD TTTIVGDGST
401: QEAVNKRVAQ IRNLIEAAEQ EYEKEKLNER IAKLSGGVAV IQVGAQTETE LKEKKLRVED ALNATKAAVE EGIVVGGGCT LLRLASKVDA IKDTLDNDEE
501: KVGADIVKRA LSYPLKLIAK NAGVNGSVVS EKVLSSDNPK YGFNAATGKY EDLMAAGIID PTKVVRCCLE HASSVAKTFL MSDCVVVEIK EPEPVVAGNP
601: MDNSGYGY

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.