Factsheet for TraesCS6A01G006400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G012000.1	Wheat	cytosol	68.06	99.03
TraesCS6D01G009100.1	Wheat	golgi	98.16	98.16
TraesCS6B01G011800.1	Wheat	plastid	97.16	97.98
TraesCS6B01G012100.3	Wheat	plastid	97.32	97.0
Os02t0102900-01	Rice	plastid	91.3	91.3
KXG29249	Sorghum	plastid	91.47	90.56
Zm00001d054089_P002	Maize	plastid	90.64	87.84
TraesCS6A01G028100.1	Wheat	plastid	84.11	84.11
TraesCS4A01G452700.2	Wheat	plastid	82.11	84.08
GSMUA_Achr9P23240_001	Banana	plastid	85.28	83.33
AT3G13470.1	Thale cress	plastid	82.94	83.22
Bra001507.1-P	Field mustard	plastid	82.11	83.22
GSMUA_Achr3P27620_001	Banana	plastid	85.12	83.17
CDX82537	Canola	plastid	81.61	83.13
KRH43861	Soybean	plastid	81.94	82.77
CDX75715	Canola	cytosol	77.76	82.59
KRH13605	Soybean	nucleus	81.44	82.4
CDX75713	Canola	plastid	81.61	82.29
AT5G56500.2	Thale cress	plastid	81.94	82.08
VIT_06s0004g00240.t01	Wine grape	plastid	83.44	82.07
CDY32855	Canola	plastid	81.44	81.99
HORVU6Hr1G000180.2	Barley	plastid	89.13	81.87
AT1G55490.3	Thale cress	plastid	82.11	81.83
Bra028922.1-P	Field mustard	plastid	80.77	81.73
Solyc01g028810.2.1	Tomato	plastid	81.77	81.64
PGSC0003DMT400061700	Potato	extracellular	81.77	81.64
VIT_09s0002g03930.t01	Wine grape	plastid	83.11	81.61
TraesCS7A01G036200.2	Wheat	golgi	84.45	81.45
CDY11918	Canola	plastid	80.77	81.18
CDY08245	Canola	plastid	81.27	81.0
Bra011919.1-P	Field mustard	plastid	81.61	80.26
CDY36809	Canola	plastid	80.27	79.08
CDY26100	Canola	plastid	81.27	77.39
Solyc03g120850.2.1	Tomato	plastid	78.09	77.19
PGSC0003DMT400006501	Potato	plastid	77.93	77.02
Bra030858.1-P	Field mustard	cytosol	81.44	70.68
CDX72433	Canola	endoplasmic reticulum	37.29	70.57
CDY02438	Canola	cytosol	81.1	69.58
CDY32775	Canola	cytosol	9.53	67.06
CDY23605	Canola	cytosol	48.16	66.36
CDY56074	Canola	plastid	47.32	59.58
CDY10557	Canola	endoplasmic reticulum, plastid	81.27	58.62
CDY43988	Canola	cytosol	48.49	56.42
Bra027431.1-P	Field mustard	cytosol	48.66	56.07
TraesCS2A01G311700.1	Wheat	plastid	58.53	54.01
CDY10302	Canola	extracellular	5.52	50.77
TraesCS4A01G315500.2	Wheat	plastid	47.49	48.46
CDX86994	Canola	mitochondrion, plastid	55.18	47.01
TraesCS1A01G145000.1	Wheat	mitochondrion	43.81	45.64
TraesCS4A01G409100.1	Wheat	mitochondrion	43.65	45.31
TraesCS1A01G361400.1	Wheat	mitochondrion	42.47	43.87
CDY40825	Canola	endoplasmic reticulum, vacuole	14.72	41.31
TraesCS5A01G366800.1	Wheat	plastid	38.96	39.42
CDX85007	Canola	cytosol, plastid	42.81	25.5
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF102	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS6A01G006400	EnsemblPlants:TraesCS6A01G006400.1	TIGR:cd03344	SEG:seg

Description

No Description!

Coordinates

chr6A:+:2398420..2402528

Molecular Weight (calculated)

63640.5 Da

IEP (calculated)

5.436

GRAVY (calculated)

-0.127

Length

598 amino acids

Sequence
(BLAST)

001: MASPFGAASS CGLKAAAPSG FATRKQLSLV SPPLVSLPQR ARPGRKCSFR VNAAKELYFN KDGSAIKKLQ TGVNKLADLV GVTLGPKGRN VVLESKYGSP
101: RIVNDGVTVA KEVELEDPVE NIGAKLVRQA AAKTNDLAGD GTTTSVILAQ GMIAEGVKIV AAGANPVQIA RGIEKTTKAL VSELRKMSKE VEDSELADVA
201: AVSAGNNYEI GNMIADAMSK VGRQGVVTLE EGKSAENNLY VVEGMQFDRG YISPYFVTDS EKMSVEYENC KLLLVDKKIN NARDLITLLE DAIKGGYPIL
301: IIAEDIEQEA LATLVVNRLR GALKIAAIKA PGFGERKSQY LDDIATLTGG TVIREEIGLS LDKADKEVLG NAAKVVITKD STTIVGDGTT QEEVTKRVTQ
401: IRNQIEASEQ EYEKEKLNER IAKLSGGVAV IQVGAQTETE LKEKKLRVED ALNATKAAVE EGIVVGGGCT LLRLASKVDA IKETLENDEQ KVGAEIVRKS
501: LSYPLKLIAK NAGVNGSVVT EKVLVNDNFR YGYNAATGKY EDLMAAGIID PTKVVRCCLE HAASVAKTFI TSDAVVVDIK ESEQAPAANP MAGSGYGF

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.