CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016540_P001	Maize	cytosol	23.73	72.12
Zm00001d053279_P001	Maize	mitochondrion	31.96	64.33
Zm00001d046709_P001	Maize	mitochondrion	31.33	63.06
Zm00001d037526_P001	Maize	plastid	33.23	59.32
TraesCS6B01G012000.1	Wheat	cytosol	70.89	54.5
HORVU4Hr1G076680.1	Barley	cytosol	33.54	53.54
HORVU5Hr1G074160.1	Barley	cytosol	32.28	52.31
HORVU2Hr1G107410.2	Barley	cytosol	32.59	51.5
HORVU4Hr1G066820.2	Barley	cytosol	34.49	46.38
CDX75715	Canola	cytosol	74.05	41.56
CDY08245	Canola	plastid	78.8	41.5
CDY23605	Canola	cytosol	56.96	41.47
AT1G55490.3	Thale cress	plastid	77.85	41.0
CDX82537	Canola	plastid	75.63	40.72
CDX75713	Canola	plastid	75.95	40.47
HORVU7Hr1G006490.2	Barley	cytosol	70.57	40.25
Zm00001d035937_P001	Maize	plastid	72.78	39.72
CDY26100	Canola	plastid	78.8	39.65
KRH13605	Soybean	nucleus	73.73	39.42
EER89076	Sorghum	plastid	72.15	39.38
KRH43861	Soybean	plastid	73.73	39.36
CDY68896	Canola	cytosol	41.14	38.58
Solyc01g028810.2.1	Tomato	plastid	73.1	38.56
GSMUA_Achr3P27620_001	Banana	plastid	74.37	38.4
PGSC0003DMT400061700	Potato	extracellular	72.78	38.4
Zm00001d045544_P002	Maize	plastid	72.15	38.0
CDY11918	Canola	plastid	71.52	37.98
GSMUA_Achr9P23240_001	Banana	plastid	73.42	37.91
CDY32855	Canola	plastid	70.89	37.71
Os02t0102900-01	Rice	plastid	70.89	37.46
Os06t0114000-02	Rice	plastid	71.2	37.44
TraesCS6A01G006400.1	Wheat	golgi	70.57	37.29
TraesCS6B01G011800.1	Wheat	plastid	69.94	37.27
CDY36809	Canola	plastid	71.52	37.23
TraesCS6B01G012100.3	Wheat	plastid	70.57	37.17
TraesCS6D01G009100.1	Wheat	golgi	70.25	37.12
TraesCS4A01G452700.2	Wheat	plastid	67.72	36.64
KXG29249	Sorghum	plastid	69.94	36.59
CDY43988	Canola	cytosol	58.54	35.99
TraesCS7A01G036200.2	Wheat	golgi	70.57	35.97
CDY02438	Canola	cytosol	79.11	35.87
Zm00001d054089_P002	Maize	plastid	69.94	35.82
TraesCS7D01G032800.1	Wheat	cytosol	70.57	35.45
TraesCS6B01G039300.2	Wheat	plastid	66.14	34.95
TraesCS6D01G031400.1	Wheat	plastid	65.19	34.45
HORVU6Hr1G005220.3	Barley	plastid	64.87	34.28
TraesCS6A01G028100.1	Wheat	plastid	64.87	34.28
CDX86994	Canola	mitochondrion, plastid	74.68	33.62
GSMUA_Achr11P...	Banana	plastid	72.78	33.05
HORVU6Hr1G000180.2	Barley	plastid	67.41	32.72
CDY59050	Canola	cytosol	32.59	30.47
CDY10557	Canola	endoplasmic reticulum, plastid	78.8	30.04
CDY66193	Canola	plastid	56.65	29.49
CDY20555	Canola	plastid	56.65	29.49
CDX79518	Canola	cytosol	18.67	29.21
CDY56074	Canola	plastid	36.08	24.0
CDX83280	Canola	plastid	43.67	23.71
CDX71396	Canola	plastid	39.56	23.63
CDY30514	Canola	plastid	43.67	23.59
CDY31190	Canola	plastid	43.35	23.38
CDY47184	Canola	plastid	42.41	23.18
CDY04527	Canola	plastid	43.35	22.99
CDY02601	Canola	plastid	41.77	22.84
CDY32775	Canola	cytosol	6.01	22.35
CDX77147	Canola	plastid	43.35	22.03
CDX93002	Canola	mitochondrion	37.97	21.82
CDX82514	Canola	mitochondrion	37.97	20.98
CDX75733	Canola	mitochondrion	37.66	20.8
CDX94835	Canola	mitochondrion	37.97	20.8
CDY19471	Canola	mitochondrion	37.34	19.9
CDY17152	Canola	mitochondrion	35.44	19.51
CDX84697	Canola	mitochondrion	34.49	19.36
CDY56079	Canola	plastid	7.59	17.91
CDY66712	Canola	mitochondrion	32.91	17.25
CDX85007	Canola	cytosol, plastid	50.95	16.04
CDY37741	Canola	mitochondrion	28.48	14.73
CDY10302	Canola	extracellular	2.85	13.85
CDY72107	Canola	mitochondrion	9.81	10.1
CDY40825	Canola	endoplasmic reticulum, vacuole	5.38	7.98
CDY31193	Canola	plastid	2.85	3.8
CDY59049	Canola	mitochondrion	1.9	2.75
Os02t0103100-01	Rice	plasma membrane, vacuole	0.32	0.68

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	GO:A0A078CBR0	EnsemblPlants:CDX72433
ProteinID:CDX72433	ProteinID:CDX72433.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00099936001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8	SUPFAM:SSF48592
SUPFAM:SSF52029	InterPro:TCP-1-like_intermed_sf	UniParc:UPI0004EC3C13	SEG:seg	:	:

Description

BnaC07g44550D

Coordinates

chrLK031796:+:1202438..1204046

Molecular Weight (calculated)

34169.7 Da

IEP (calculated)

5.495

GRAVY (calculated)

0.126

Length

316 amino acids

Sequence
(BLAST)

001: MLIVLALYIV EGLQFDNGYL SSFFVTDNEK MAVEFDHCKL LLVDMKIANA EDIVGVIEVA IRGGYPLLVI AQEIDLEALA ILVGYKRRGA LKIAALKAPG
101: FGELKSQYLD DIAILTGATV IREEVGLSLD KSGKEVLGHA AKVVLTKESS TIVGDGSTHD AVQKHVTQIK NLIEQAEQGY EKEKLNERIS KLSAGVAVIQ
201: VGAQTEAKLK EKKLRVEDAL NATKAAVEEG VVVGGGCILL HLASKVDVIK DSLDDEEKVG ADIVKRGLTY PLKRISENAG EKVLANEDLM AAKVLRCCLE
301: NSVKVLRTFF MSHQGA

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.