Factsheet for TraesCS4A01G315500.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G550700.1	Wheat	plastid	99.49	99.15
TraesCS5B01G563900.2	Wheat	plastid	99.15	98.81
HORVU5Hr1G125130.1	Barley	plastid	98.98	98.81
Os03t0859600-01	Rice	plastid	48.81	91.67
EER90466	Sorghum	plastid	88.91	89.83
Zm00001d034919_P001	Maize	plastid	88.4	88.7
Os03t0859700-00	Rice	extracellular, plastid	26.79	84.86
GSMUA_Achr11P...	Banana	plastid	82.76	82.76
Bra000498.1-P	Field mustard	mitochondrion	75.43	82.62
GSMUA_AchrUn_...	Banana	plastid	80.89	82.15
KRH25068	Soybean	nucleus	81.57	81.85
CDY68896	Canola	cytosol	46.76	81.31
VIT_06s0061g00270.t01	Wine grape	plastid	81.06	81.06
Solyc11g069790.1.1	Tomato	plastid	80.03	79.76
CDX83280	Canola	plastid	78.84	79.38
Bra034383.1-P	Field mustard	plastid	79.18	79.32
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	79.52	79.25
CDY30514	Canola	plastid	79.01	79.15
CDY31190	Canola	plastid	78.67	78.67
Bra011985.1-P	Field mustard	plastid	78.33	78.46
CDY04527	Canola	plastid	78.67	77.35
AT2G28000.1	Thale cress	plastid	77.3	77.3
KRH30612	Soybean	endoplasmic reticulum	76.62	75.72
Solyc06g075010.2.1	Tomato	plastid	75.77	75.38
PGSC0003DMT400031301	Potato	plastid	75.26	74.87
CDX71396	Canola	plastid	67.06	74.29
CDX77147	Canola	plastid	78.84	74.28
TraesCS5A01G366800.1	Wheat	plastid	57.34	56.85
TraesCS4A01G452700.2	Wheat	plastid	47.44	47.6
TraesCS6A01G006400.1	Wheat	golgi	48.46	47.49
TraesCS6A01G028100.1	Wheat	plastid	47.78	46.82
TraesCS7A01G036200.2	Wheat	golgi	48.63	45.97
TraesCS4A01G409100.1	Wheat	mitochondrion	43.34	44.1
TraesCS1A01G145000.1	Wheat	mitochondrion	42.83	43.73
TraesCS1A01G361400.1	Wheat	mitochondrion	39.93	40.41
TraesCS2A01G311700.1	Wheat	plastid	41.47	37.5

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0005840	GO:GO:0006457
GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0022626	GO:GO:0042026	GO:GO:0048046	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF179	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS4A01G315500	EnsemblPlants:TraesCS4A01G315500.2	TIGR:cd03344
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:605656378..605659792

Molecular Weight (calculated)

61488.8 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.033

Length

586 amino acids

Sequence
(BLAST)

001: MATIPTTGSA SLLRGSAALQ RDGRSTRPSS AARPLPGRRA RSAVRASAKD IAFDQASRSA LQAGVEKLAA AVGVTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELADPM ENAGAALIRE VASKTNDSAG DGTTTASVLA REIIKLGLLS VTSGANPVSI KKGIDKTVQS LVEELEKKSR PVKGSGDIKA IAAISAGNDD
201: FIGTMIAEAI NKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NSEKSVVEFE NARVLVTDQK ISSIKEILPL LEQTTQLRAP LLIIAEDVSG
301: EALATLVVNK LRGILNVAAI KAPGFGERRK ALLQDIAIVT GAEFQAKDLG QLIEQTTVEQ LGIARKVTIS GSSTTIIADV ATKDEIQARI AQLKRELSQT
401: DSTYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AAYVHLSTLV PAIKEKLDDP EERLGADIIQ KALVAPASLI
501: AHNAGVEGEV IVDKIKDSEW EFGYNAMTDK HENLVEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVEK PSKKAPAPAG MPQGMM

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.