Factsheet for TraesCS4A01G409100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G307700.1	Wheat	mitochondrion	99.48	99.48
TraesCS1A01G145000.1	Wheat	mitochondrion	91.84	92.16
Os03t0143400-01	Rice	mitochondrion	92.19	92.03
HORVU4Hr1G078820.3	Barley	plastid	98.78	90.17
KXG40202	Sorghum	cytosol	62.5	88.45
TraesCS4D01G305900.1	Wheat	golgi	99.83	87.39
VIT_05s0051g00340.t01	Wine grape	mitochondrion	86.81	86.96
KRH34594	Soybean	mitochondrion	85.76	85.62
KRH33513	Soybean	mitochondrion	85.24	85.39
KRG92192	Soybean	mitochondrion	85.24	85.39
GSMUA_Achr10P...	Banana	mitochondrion	84.9	85.04
Solyc05g053470.2.1	Tomato	plastid	84.38	84.82
GSMUA_Achr1P11160_001	Banana	mitochondrion	85.07	84.78
AT3G23990.1	Thale cress	mitochondrion	84.9	84.75
KRG90277	Soybean	mitochondrion	84.38	84.52
Bra001934.1-P	Field mustard	mitochondrion	84.55	84.4
CDX94835	Canola	mitochondrion	84.55	84.4
PGSC0003DMT400030265	Potato	mitochondrion	84.2	84.35
PGSC0003DMT400069855	Potato	mitochondrion	83.68	84.12
CDX93002	Canola	mitochondrion	80.21	84.0
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	83.85	83.42
CDX84697	Canola	mitochondrion	80.9	82.77
CDY72107	Canola	mitochondrion	44.1	82.74
CDX79518	Canola	cytosol	28.99	82.67
Bra022931.1-P	Field mustard	mitochondrion	79.51	82.23
AT2G33210.1	Thale cress	mitochondrion	82.47	81.2
Bra005514.1-P	Field mustard	mitochondrion	78.65	81.04
CDY17152	Canola	mitochondrion	80.03	80.31
CDY59050	Canola	cytosol	47.05	80.18
CDY19471	Canola	mitochondrion	82.12	79.76
CDY59049	Canola	mitochondrion	27.08	71.56
TraesCS1A01G361400.1	Wheat	mitochondrion	67.71	67.36
Bra021836.1-P	Field mustard	cytosol	50.0	64.43
GSMUA_Achr10P...	Banana	cytosol	15.28	63.77
CDY66712	Canola	mitochondrion	63.72	60.86
CDY37741	Canola	mitochondrion	63.19	59.57
TraesCS4A01G452700.2	Wheat	plastid	44.97	44.35
TraesCS6A01G006400.1	Wheat	golgi	45.31	43.65
TraesCS4A01G315500.2	Wheat	plastid	44.1	43.34
TraesCS7A01G036200.2	Wheat	golgi	45.49	42.26
TraesCS6A01G028100.1	Wheat	plastid	43.23	41.64
TraesCS5A01G366800.1	Wheat	plastid	38.54	37.56
TraesCS2A01G311700.1	Wheat	plastid	39.24	34.88

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS4A01G409100
EnsemblPlants:TraesCS4A01G409100.1	TIGR:cd03344	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:+:681716618..681721572

Molecular Weight (calculated)

61132.0 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.064

Length

576 amino acids

Sequence
(BLAST)

001: MYRAAASLAS KARLAGSSAR QVGSRLAWSR NYAAKDIRFG VEARAMMLKG VEDLADAVKL TMGPKGRTVI IEQSFGAPKV TKDGVTVAKS IEFSDRVKNV
101: GASLVKQVAN ATNDTAGDGT TCATVLTKAI FTEGCKSVAA GMNAMDLRRG ISMAVDSVVT NLKGMARMIN TSEEIAQVGT ISANGEREIG ELIAKAMEKV
201: GKEGVITIAD GNTLYNELEV VEGMKLDRGY ISPYFITNQK NQKCELDDPL ILIHDKKVSN LRSLVKVLEF ALQKQRPLLI VAEDLESEAL GTLILNKLRG
301: GFKVCAIKAP GFGENRKSNL QDLAILTGGE VITEELGMNL ENFEPNMLGT CKKVTISKDD TVILDGAGDK KAIEERAELL RSSIEQCTSD YDKEKIQERL
401: AKLSGGVAVL KIGGASEAEV GEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKDLDKL PTANFDQKIG VQIIQNALKT PVHTIATNAG VEGAVIVGKL
501: LEQDNTDLGY DAAKGEYVDM VKAGIIDPLK VIRTALVDAA SVSSLMTTTE AIIVEIPKED KAAPAMGGGG MGGMDF

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.