Factsheet for TraesCS4D01G305900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
endoplasmic reticulum 3
mitochondrion 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	endoplasmic reticulum

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G409100.1	Wheat	mitochondrion	87.39	99.83
TraesCS4B01G307700.1	Wheat	mitochondrion	87.23	99.65
HORVU4Hr1G078820.3	Barley	plastid	90.73	94.61
TraesCS1D01G144000.1	Wheat	mitochondrion	80.24	91.99
Os03t0143400-01	Rice	mitochondrion	80.55	91.85
KXG40202	Sorghum	cytosol	54.86	88.7
VIT_05s0051g00340.t01	Wine grape	mitochondrion	75.84	86.78
KRH34594	Soybean	mitochondrion	75.08	85.62
KRH33513	Soybean	mitochondrion	74.77	85.57
KRG92192	Soybean	mitochondrion	74.62	85.39
GSMUA_Achr10P...	Banana	mitochondrion	74.47	85.22
KRG90277	Soybean	mitochondrion	74.01	84.7
Solyc05g053470.2.1	Tomato	plastid	73.71	84.64
GSMUA_Achr1P11160_001	Banana	mitochondrion	74.32	84.6
AT3G23990.1	Thale cress	mitochondrion	74.16	84.58
Bra001934.1-P	Field mustard	mitochondrion	73.86	84.23
CDX94835	Canola	mitochondrion	73.86	84.23
PGSC0003DMT400030265	Potato	mitochondrion	73.56	84.17
PGSC0003DMT400069855	Potato	mitochondrion	73.1	83.94
CDX93002	Canola	mitochondrion	70.06	83.82
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	73.25	83.25
CDY72107	Canola	mitochondrion	38.6	82.74
CDX84697	Canola	mitochondrion	70.67	82.59
CDX79518	Canola	cytosol	25.23	82.18
Bra022931.1-P	Field mustard	mitochondrion	69.45	82.05
AT2G33210.1	Thale cress	mitochondrion	72.04	81.03
Bra005514.1-P	Field mustard	mitochondrion	68.69	80.86
CDY17152	Canola	mitochondrion	69.91	80.14
CDY59050	Canola	cytosol	41.03	79.88
CDY19471	Canola	mitochondrion	71.73	79.6
CDY59049	Canola	mitochondrion	23.71	71.56
TraesCS1D01G365800.1	Wheat	mitochondrion	59.57	67.82
Bra021836.1-P	Field mustard	cytosol	43.77	64.43
GSMUA_Achr10P...	Banana	cytosol	13.37	63.77
CDY66712	Canola	mitochondrion	55.78	60.86
CDY37741	Canola	mitochondrion	55.32	59.57
TraesCS5D01G550700.1	Wheat	plastid	38.6	43.2
TraesCS6D01G009100.1	Wheat	golgi	39.21	43.14
TraesCS2D01G049500.1	Wheat	golgi, plastid	36.93	42.04
TraesCS7D01G032800.1	Wheat	cytosol	39.82	41.65
TraesCS6D01G031400.1	Wheat	plastid	37.69	41.47
TraesCS2D01G310000.3	Wheat	plastid	34.19	38.4
TraesCS5D01G376000.1	Wheat	plastid	32.98	36.78

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS4D01G305900
EnsemblPlants:TraesCS4D01G305900.1	TIGR:cd03344	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:474432318..474437231

Molecular Weight (calculated)

70099.0 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.070

Length

658 amino acids

Sequence
(BLAST)

001: MRLNPKPLRG WILLELPSGP LASLPRYCKA SALWSFFPLL QVARLLFTPD PPSRSPPPSS PPPSRETARE IQTVASLPPS VAMYRAAASL ASKARLAGSS
101: ARQVGSRLAW SRNYAAKDIR FGVEARAMML KGVEDLADAV KLTMGPKGRT VIIEQSFGAP KVTKDGVTVA KSIEFSDRVK NVGASLVKQV ANATNDTAGD
201: GTTCATVLTK AIFTEGCKSV AAGMNAMDLR RGISMAVDSV VTNLKGMARM INTSEEIAQV GTISANGERE IGELIAKAME KVGKEGVITI ADGNTLYNEL
301: EVVEGMKLDR GYISPYFITN QKNQKCELDD PLILIHDKKV SNLRSLVKVL EFALQKQRPL LIVAEDLESE ALGTLILNKL RGGFKVCAIK APGFGENRKS
401: NLQDLAILTG GEVITEELGM NLENFEPNML GTCKKVTISK DDTVILDGAG DKKAIEERAE LLRSSIEQCT SDYDKEKIQE RLAKLSGGVA VLKIGGASEA
501: EVGEKKDRVT DALNATKAAV EEGIVPGGGV ALLYASKDLD KLPTANFDQK IGVQIIQNAL KTPVHTIATN AGVEGAVIVG KLLEQENTDL GYDAAKGEYV
601: DMVKAGIIDP LKVIRTALVD AASVSSLMTT TEAIIVEIPK EDKAAPAMGG GGMGGMDF

Best Arabidopsis Sequence Match ( AT2G33210.1 )
(BLAST)

001: MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMETV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA
301: NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASETEV SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT PVYTIASNAG VEGAVVVGKL
501: LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

Arabidopsis Description

HSP60-2Chaperonin CPN60-like 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7B5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.