Factsheet for TraesCS1D01G144000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308
mitochondrion: 26136264

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G162300.1	Wheat	mitochondrion	98.78	98.78
TraesCS1A01G145000.1	Wheat	mitochondrion	98.78	98.78
Zm00001d014090_P002	Maize	mitochondrion	94.77	94.28
Zm00001d032789_P001	Maize	plastid	94.43	94.1
Os10t0462900-01	Rice	mitochondrion	94.08	94.08
EER94121	Sorghum	mitochondrion	94.25	93.76
VIT_05s0051g00340.t01	Wine grape	mitochondrion	89.02	88.87
KRH33513	Soybean	mitochondrion	87.63	87.48
GSMUA_Achr10P...	Banana	mitochondrion	86.76	86.61
KRG90277	Soybean	mitochondrion	86.59	86.43
KRG92192	Soybean	mitochondrion	86.59	86.43
KRH34594	Soybean	mitochondrion	86.76	86.31
GSMUA_Achr1P11160_001	Banana	mitochondrion	86.76	86.16
Bra001934.1-P	Field mustard	mitochondrion	86.06	85.62
AT3G23990.1	Thale cress	mitochondrion	85.89	85.44
Solyc05g053470.2.1	Tomato	plastid	85.19	85.34
CDX94835	Canola	mitochondrion	85.71	85.27
CDX93002	Canola	mitochondrion	81.53	85.09
PGSC0003DMT400069855	Potato	mitochondrion	84.67	84.82
CDY72107	Canola	mitochondrion	45.3	84.69
PGSC0003DMT400030265	Potato	mitochondrion	84.49	84.35
CDX84697	Canola	mitochondrion	82.4	84.01
HORVU1Hr1G038680.8	Barley	mitochondrion	97.56	83.71
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	84.15	83.42
Bra022931.1-P	Field mustard	mitochondrion	80.66	83.12
AT2G33210.1	Thale cress	mitochondrion	84.67	83.08
Bra005514.1-P	Field mustard	mitochondrion	79.97	82.11
CDY17152	Canola	mitochondrion	81.53	81.53
CDX79518	Canola	cytosol	28.57	81.19
CDY19471	Canola	mitochondrion	83.8	81.11
CDY59050	Canola	cytosol	47.39	80.47
TraesCS4D01G305900.1	Wheat	golgi	91.99	80.24
CDY59049	Canola	mitochondrion	26.83	70.64
TraesCS1D01G365800.1	Wheat	mitochondrion	68.29	67.82
Bra021836.1-P	Field mustard	cytosol	51.22	65.77
CDY66712	Canola	mitochondrion	65.16	62.02
GSMUA_Achr10P...	Banana	cytosol	14.63	60.87
CDY37741	Canola	mitochondrion	64.11	60.23
TraesCS6D01G009100.1	Wheat	golgi	45.3	43.48
TraesCS5D01G550700.1	Wheat	plastid	43.9	42.86
TraesCS2D01G049500.1	Wheat	golgi, plastid	42.68	42.39
TraesCS7D01G032800.1	Wheat	cytosol	45.99	41.97
TraesCS6D01G031400.1	Wheat	plastid	42.68	40.97
TraesCS2D01G310000.3	Wheat	plastid	39.9	39.08
TraesCS5D01G376000.1	Wheat	plastid	37.28	36.27

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
EnsemblPlantsGene:TraesCS1D01G144000	EnsemblPlants:TraesCS1D01G144000.1	TIGR:cd03344	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:+:199594780..199600260

Molecular Weight (calculated)

61126.0 Da

IEP (calculated)

5.409

GRAVY (calculated)

-0.085

Length

574 amino acids

Sequence
(BLAST)

001: MYRAAASLAS KARQAGSSAR QVGSRLAWSR NYAAKDIRFG VEARASMLRG VEELADAVKV TMGPKGRTVI IEQSFGAPKV TKDGVTVAKS IEFKDRVKNV
101: GASLVKQVAN ATNDSAGDGT TCATVLTKAI FTEGCKSVAA GMNAMDLRRG ISMAVDDVVT NLKGMARMIS TSKEIAQVGT ISANGEREIG ELIAKAMEKV
201: GKEGVITIAD GNTLYNELEV VEGMKLDRGY ISPYFITNQK TQKCELEDPL ILIHDKKISN MHAVVKVLEM ALKKQRSLLI VAEDLESEAL GTLIINKLRA
301: GIKVCAVKAP GFGENRKANL QDLAILTGGE VITEELGMNL ENFDPEMLGT CKKVTVSKDD TVILDGAGDK KNIEERADQI RSVIEQSTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASEAEV SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKALDKL QTANFDQKIG VQIIQNALKT PVYTIACNAG VEGAVVVGKL
501: LEQENTDLGY DAAKGEYVDM VKVGIIDPLK VIRTALVDAA SVSSLMTTTE AIIVEVPKEE KEAPAMGGMG GMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.