CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014090_P002	Maize	mitochondrion	98.44	98.44
Zm00001d032789_P001	Maize	plastid	97.75	97.92
Os10t0462900-01	Rice	mitochondrion	96.36	96.86
TraesCS1B01G162300.1	Wheat	mitochondrion	94.63	95.12
TraesCS1A01G145000.1	Wheat	mitochondrion	94.63	95.12
TraesCS1D01G144000.1	Wheat	mitochondrion	93.76	94.25
VIT_05s0051g00340.t01	Wine grape	mitochondrion	88.73	89.04
KXG40202	Sorghum	cytosol	62.56	88.7
KRH33513	Soybean	mitochondrion	88.04	88.35
GSMUA_Achr1P11160_001	Banana	mitochondrion	88.21	88.06
KRG90277	Soybean	mitochondrion	87.69	88.0
GSMUA_Achr10P...	Banana	mitochondrion	87.35	87.65
KRH34594	Soybean	mitochondrion	87.52	87.52
KRG92192	Soybean	mitochondrion	87.17	87.48
Solyc05g053470.2.1	Tomato	plastid	86.31	86.91
AT3G23990.1	Thale cress	mitochondrion	86.83	86.83
PGSC0003DMT400069855	Potato	mitochondrion	86.14	86.74
Bra001934.1-P	Field mustard	mitochondrion	86.66	86.66
CDX94835	Canola	mitochondrion	86.31	86.31
CDX93002	Canola	mitochondrion	82.15	86.18
PGSC0003DMT400030265	Potato	mitochondrion	84.92	85.22
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	84.58	84.28
CDX84697	Canola	mitochondrion	81.28	83.3
AT2G33210.1	Thale cress	mitochondrion	84.23	83.08
CDY72107	Canola	mitochondrion	44.19	83.06
Bra005514.1-P	Field mustard	mitochondrion	79.9	82.47
Bra022931.1-P	Field mustard	mitochondrion	79.55	82.41
CDX79518	Canola	cytosol	28.77	82.18
CDY59050	Canola	cytosol	48.01	81.95
CDY17152	Canola	mitochondrion	81.46	81.88
CDY19471	Canola	mitochondrion	83.71	81.45
HORVU1Hr1G038680.8	Barley	mitochondrion	94.28	81.32
CDY59049	Canola	mitochondrion	27.9	73.85
EES19881	Sorghum	mitochondrion	68.46	67.99
Bra021836.1-P	Field mustard	cytosol	51.13	66.0
GSMUA_Achr10P...	Banana	cytosol	14.9	62.32
CDY66712	Canola	mitochondrion	64.82	62.02
CDY37741	Canola	mitochondrion	63.78	60.23
EER89076	Sorghum	plastid	45.75	45.6
KXG29249	Sorghum	plastid	46.79	44.7
EER90466	Sorghum	plastid	43.5	43.28
EES19317	Sorghum	plastid	42.81	42.81
EER96340	Sorghum	plastid	40.03	39.49

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8059266	UniProt:C5WZF2
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlants:EER94121	ProteinID:EER94121
ProteinID:EER94121.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0042026	GO:GO:0044183	GO:GO:0045041	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	EnsemblPlantsGene:SORBI_3001G228200	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.1716	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001A82937
RefSeq:XP_002467123.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:21889282..21895942

Molecular Weight (calculated)

61078.9 Da

IEP (calculated)

5.532

GRAVY (calculated)

-0.076

Length

577 amino acids

Sequence
(BLAST)

001: MYRAAASLAS KARQAGSSAA ARQVGSRLAW SRNYAAKDIK FGVEARALML RGVEELADAV KVTMGPKGRN VVIEQSFGAP KVTKDGVTVA KSIEFKDRVK
101: NVGASLVKQV ANATNDTAGD GTTCATVLTK AIFTEGCKSV AAGMNAMDLR RGISMAVDAV VTNLKNMARM ISTSEEIAQV GTISANGERE IGELIAKAME
201: KVGKEGVITI ADGNTLYNEL EVVEGMKLDR GYISPYFITN SKTQKCELDD PLILIHDKKV TNMHAVVKVL ELALKKQKPL LIVAEDVESE ALGTLIINKL
301: RAGIKVCAVK APGFGENRKA NLQDLAILTG GEVITEELGM NLENVEPHML GTCKKVTVSK DDTVILDGSG DKKSIEERAE QIRSAIENST SDYDKEKLQE
401: RLAKLSGGVA VLKIGGASEA EVGEKKDRVT DALNATKAAV EEGIVPGGGV ALLYASKELD KLQTANFDQK IGVQIIQNAL KTPVHTIASN AGVEGAVVVG
501: KLLEQENTDL GYDAAKGEYV DMVKAGIIDP LKVIRTALVD AASVSSLMTT TESIIVEIPK EEAPAPAMGG GMGGMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.