CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0563300-02	Rice	plastid	88.89	89.04
TraesCS5B01G368900.1	Wheat	plastid	89.23	88.47
HORVU0Hr1G038830.17	Barley	plastid	89.23	88.47
TraesCS5A01G366800.1	Wheat	plastid	89.06	88.16
TraesCS5D01G376000.1	Wheat	plastid	88.21	87.46
VIT_01s0011g01680.t01	Wine grape	plastid	61.37	61.58
PGSC0003DMT400027020	Potato	cytosol	55.9	61.01
KRH50415	Soybean	plastid	60.0	59.8
Solyc02g068730.2.1	Tomato	plastid	58.63	58.83
CDY47184	Canola	plastid	58.12	58.82
AT5G18820.1	Thale cress	plastid	57.61	58.61
KRG89369	Soybean	plastid	58.97	58.57
Bra023694.1-P	Field mustard	plastid	57.78	58.48
CDY02601	Canola	plastid	57.44	58.13
EES19317	Sorghum	plastid	55.9	56.67
EER90466	Sorghum	plastid	55.56	56.03
Zm00001d005373_P001	Maize	plastid	96.58	47.04
EER89076	Sorghum	plastid	39.66	40.07
KXG40202	Sorghum	cytosol	27.86	40.05
EER94121	Sorghum	mitochondrion	39.49	40.03
KXG29249	Sorghum	plastid	40.34	39.07
EES19881	Sorghum	mitochondrion	37.44	37.69
GSMUA_Achr10P...	Banana	cytosol	65.98	31.48

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:8059775	UniProt:C5X5T6	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	EnsemblPlants:EER96340	ProteinID:EER96340
ProteinID:EER96340.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0006458	GO:GO:0007005	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00298
PANTHER:PTHR11353	PANTHER:PTHR11353:SF121	EnsemblPlantsGene:SORBI_3002G131000	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001A83592	RefSeq:XP_002459819.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:18574753..18579534

Molecular Weight (calculated)

62279.9 Da

IEP (calculated)

6.220

GRAVY (calculated)

0.116

Length

585 amino acids

Sequence
(BLAST)

001: MYLTAVSFAP AAGFSPSSQQ LLPRSARVGR RLVVRADVKV ISTGEACRRG LAAGIDKLAD AVAVTLGPKG RNVVIDQDDV PKVINDGVTI AKAIELPNAL
101: EHAGATLLQE IASKTNSAVG DGTTTAIVLA REIINLGLLA VATGANPVAL RRGIDKAVHE LIKILKSKCI PVSTKEDIKA VASISSGNDE YVGNLIADAM
201: EKIGPDGIIK IESSSSIYTT VEVQEGMKID KGYVSPYFIT NQDKAIVEFE NARVLLTDQR VNEVQEILPL LEKTTQLSVP LLIIAEDVSH EVYSTLVLNK
301: LNGLLNVAVV KCPGLGDEKK AILQDIAIMT GADFFASDLG WGLHGITSDQ LGMAQKITIT SESTTIIAHP SMRPEIEARI MQLKKDLEET TSSYLKERFS
401: ARIAKLSRGV GVIKVGAATE AELEDRKLRV EDAKNATFAA ISEGITPGGG VTYVHLSKHI PSIMDLVDDA EEKMGVNIVG KALLVPAMTI ARNAGAEGPA
501: VVEKLLASEW RVGYNAMTGE FEDLVAAGVV DPCRVARCVL QNSASIAGLI LMTQAMMFDK VKKKKSPIPD IPGIPPLQIS QKAKA

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.