Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0011g01680.t01 | Wine grape | plastid | 33.52 | 70.5 |
| PGSC0003DMT400027020 | Potato | cytosol | 29.93 | 68.47 |
| Solyc02g068730.2.1 | Tomato | plastid | 32.46 | 68.27 |
| Os09t0563300-02 | Rice | plastid | 31.65 | 66.44 |
| EER96340 | Sorghum | plastid | 31.48 | 65.98 |
| KRH50415 | Soybean | plastid | 31.48 | 65.76 |
| CDY47184 | Canola | plastid | 30.91 | 65.57 |
| HORVU0Hr1G038830.17 | Barley | plastid | 31.48 | 65.42 |
| KRG89369 | Soybean | plastid | 31.4 | 65.36 |
| Bra023694.1-P | Field mustard | plastid | 30.75 | 65.22 |
| AT5G18820.1 | Thale cress | plastid | 30.59 | 65.22 |
| CDY02601 | Canola | plastid | 30.59 | 64.88 |
| TraesCS5A01G366800.1 | Wheat | plastid | 31.16 | 64.64 |
| TraesCS5B01G368900.1 | Wheat | plastid | 31.0 | 64.41 |
| TraesCS5D01G376000.1 | Wheat | plastid | 30.75 | 63.9 |
| GSMUA_Achr11P... | Banana | plastid | 30.34 | 63.48 |
| GSMUA_AchrUn_... | Banana | plastid | 29.61 | 62.91 |
| GSMUA_Achr9P23240_001 | Banana | plastid | 20.96 | 41.99 |
| GSMUA_Achr3P27620_001 | Banana | plastid | 20.8 | 41.67 |
| GSMUA_Achr1P11160_001 | Banana | mitochondrion | 18.6 | 39.45 |
| GSMUA_Achr10P... | Banana | mitochondrion | 18.43 | 39.3 |
| GSMUA_Achr7P24090_001 | Banana | cytosol | 16.72 | 38.68 |
| GSMUA_Achr9P18480_001 | Banana | plastid | 18.52 | 38.41 |
| GSMUA_Achr11P... | Banana | plastid | 21.61 | 38.07 |
| Zm00001d005373_P001 | Maize | plastid | 36.87 | 37.64 |
| GSMUA_Achr10P... | Banana | cytosol | 4.0 | 35.51 |
| GSMUA_Achr8P14600_001 | Banana | plastid | 7.34 | 34.22 |
Protein Annotations
| MapMan:1.1.8.1.6.2.1 | Gene3D:1.10.560.10 | MapMan:1.2.1.2.1.1 | MapMan:19.1.7.1 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 |
| InterPro:Chaperonin_Cpn60_CS | InterPro:Chaprnin_Cpn60 | ncoils:Coil | InterPro:Cpn60/TCP-1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0042026 | InterPro:GROEL-like_equatorial_sf | EnsemblPlantsGene:GSMUA_Achr10G20970_001 |
| EnsemblPlants:GSMUA_Achr10P20970_001 | EnsemblPlants:GSMUA_Achr10T20970_001 | InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 |
| UniProt:M0RK22 | PFAM:PF00118 | PRINTS:PR00298 | ScanProsite:PS00296 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF172 |
| SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 | SUPFAM:SSF90257 | InterPro:TCP-1-like_intermed_sf | TIGRFAMs:TIGR02348 |
| UniParc:UPI000295FAA4 | SEG:seg | : | : | : | : |
Description
RuBisCO large subunit-binding protein subunit alpha, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G20970_001]
Coordinates
chr10:-:26782419..26793640
Molecular Weight (calculated)
134423.0 Da
IEP (calculated)
4.707
GRAVY (calculated)
-0.352
Length
1226 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAADVVVVQD KQDVKKPYDQ DVIITEKQDD IKPEIQDLQD SALQDSSQEP NQFEQANLQN APANSSISLQ NGVGIIASGV LGALYATSQK EKTATKSTLE
0101: SLESKLNEKE AVMFMMKENF EKMLQREQEE KKKQEKKFEE AETSLLNQLA STSETKAALL QELQNESKLV EELRAQISQL ESSITRIAAE KNMLEAEFKE
0201: KVDNVDVLQD RVVLLGLQIN DTEKNIESLK VSLSENESEC KKLSSNVEQL RNELALANST IQQLKEELLG TKAELNSKIS LIDSLNEKIQ SLSSEKDNCV
0301: QRIKDLMKDY DHLKTSSDRR AAHDAELLSK KEDQIRDNEE KLELAIAEGR DNNAIIAELR KEKDDLKALL EREASTVKIL KGELQSTQEA LGASKFEASN
0401: LSKDLDEARG SYEKLMTEVS KIQDDFSETK NTLAGSLEEA KSNAKFLSVE LISVKAVLKK TNEELDITSK ELKNAVADHE NLKKELVETY KRLEAAMHEV
0501: NEERKVVSTL NRELDVLGNQ ILTDSEARRS LEADLDEATK SLDEMNESAL LLSKELESSN SRNVSLEAEK EMLLKSLTEQ QKVTKEAQEN IEDAQNLVMR
0601: LGGDKENLEK RAKKFGEELA SAKGEILRLR RQISVGKESV DELELELHPK ANEAAAGAPF SRISDLTRVH FLSKNTSFRR NFVVRAGPKR ISFDKDCRRA
0701: LVAGIDKLAD AVSVTLGPRG RNVVLDESEV PKVINDGVTI ARAIELSDGI ENAGAMLIQE VACKTNDSAG DGTTTAIVLA REIIKLGMLA VVSGANPVSL
0801: KKGIDKTVHE LIQVLRSKCI AINGREDIKA VAAISAGNDD FIGDIMATAI GKIGPDGVIL IESSTSFDTT IEVQEGMKID KGYMSPHFIT NQDKSIVEFE
0901: NAKVLVTDQK VTNVRDIVPL LEKTTQLSVP LLIIAEDISS EVLATLVLNK LQGILNVAAI KCPGFGEGKK APLQDIALMT GADFLASDLG LMLRDVTSDQ
1001: LGIARKVTIT SNSTTIVADP SMKAEIQARI SQIKKDLTEV DSSYLRKKLS ERIAKLSSGF AVIKVGGLTE AELEDRKLRM EDAKNATFAA MDEGIAPGGG
1101: ATYVQLSKHI STISDLFEDP EEKIGAEIVG KALLVPAYLI AQNAGVDGSI VVEKLLDSDW RNGYNAMTNE FEDLLKSGVV DPCRVSRCAL QNAASVAGVV
1201: LLSQAAMVDK RRKPKPAVPL VPGISP
0101: SLESKLNEKE AVMFMMKENF EKMLQREQEE KKKQEKKFEE AETSLLNQLA STSETKAALL QELQNESKLV EELRAQISQL ESSITRIAAE KNMLEAEFKE
0201: KVDNVDVLQD RVVLLGLQIN DTEKNIESLK VSLSENESEC KKLSSNVEQL RNELALANST IQQLKEELLG TKAELNSKIS LIDSLNEKIQ SLSSEKDNCV
0301: QRIKDLMKDY DHLKTSSDRR AAHDAELLSK KEDQIRDNEE KLELAIAEGR DNNAIIAELR KEKDDLKALL EREASTVKIL KGELQSTQEA LGASKFEASN
0401: LSKDLDEARG SYEKLMTEVS KIQDDFSETK NTLAGSLEEA KSNAKFLSVE LISVKAVLKK TNEELDITSK ELKNAVADHE NLKKELVETY KRLEAAMHEV
0501: NEERKVVSTL NRELDVLGNQ ILTDSEARRS LEADLDEATK SLDEMNESAL LLSKELESSN SRNVSLEAEK EMLLKSLTEQ QKVTKEAQEN IEDAQNLVMR
0601: LGGDKENLEK RAKKFGEELA SAKGEILRLR RQISVGKESV DELELELHPK ANEAAAGAPF SRISDLTRVH FLSKNTSFRR NFVVRAGPKR ISFDKDCRRA
0701: LVAGIDKLAD AVSVTLGPRG RNVVLDESEV PKVINDGVTI ARAIELSDGI ENAGAMLIQE VACKTNDSAG DGTTTAIVLA REIIKLGMLA VVSGANPVSL
0801: KKGIDKTVHE LIQVLRSKCI AINGREDIKA VAAISAGNDD FIGDIMATAI GKIGPDGVIL IESSTSFDTT IEVQEGMKID KGYMSPHFIT NQDKSIVEFE
0901: NAKVLVTDQK VTNVRDIVPL LEKTTQLSVP LLIIAEDISS EVLATLVLNK LQGILNVAAI KCPGFGEGKK APLQDIALMT GADFLASDLG LMLRDVTSDQ
1001: LGIARKVTIT SNSTTIVADP SMKAEIQARI SQIKKDLTEV DSSYLRKKLS ERIAKLSSGF AVIKVGGLTE AELEDRKLRM EDAKNATFAA MDEGIAPGGG
1101: ATYVQLSKHI STISDLFEDP EEKIGAEIVG KALLVPAYLI AQNAGVDGSI VVEKLLDSDW RNGYNAMTNE FEDLLKSGVV DPCRVSRCAL QNAASVAGVV
1201: LLSQAAMVDK RRKPKPAVPL VPGISP
001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS
Arabidopsis Description
CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.