Factsheet for Bra023694.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47184	Canola	plastid	98.79	98.79
AT5G18820.1	Thale cress	plastid	92.73	93.22
VIT_01s0011g01680.t01	Wine grape	plastid	72.66	72.04
KRH50415	Soybean	plastid	70.93	69.85
KRG89369	Soybean	plastid	70.93	69.61
PGSC0003DMT400027020	Potato	cytosol	64.53	69.59
Solyc02g068730.2.1	Tomato	plastid	69.03	68.44
Bra000498.1-P	Field mustard	mitochondrion	57.09	61.68
Bra034383.1-P	Field mustard	plastid	59.69	58.97
Bra011985.1-P	Field mustard	plastid	59.52	58.8
Os09t0563300-02	Rice	plastid	59.0	58.39
HORVU0Hr1G038830.17	Barley	plastid	59.17	57.97
EER96340	Sorghum	plastid	58.48	57.78
TraesCS5A01G366800.1	Wheat	plastid	58.82	57.53
TraesCS5B01G368900.1	Wheat	plastid	58.48	57.29
TraesCS5D01G376000.1	Wheat	plastid	58.3	57.12
Bra001507.1-P	Field mustard	plastid	44.64	43.73
Bra028922.1-P	Field mustard	plastid	44.46	43.49
Bra011919.1-P	Field mustard	plastid	44.81	42.6
Bra030858.1-P	Field mustard	cytosol	44.64	37.45
Bra001934.1-P	Field mustard	mitochondrion	37.2	37.26
Bra012462.1-P	Field mustard	plastid	38.24	36.41
Bra005514.1-P	Field mustard	mitochondrion	34.95	36.14
Bra022931.1-P	Field mustard	mitochondrion	34.43	35.73
Bra001524.1-P	Field mustard	mitochondrion	34.78	35.14
Bra027431.1-P	Field mustard	cytosol	30.28	33.72
Bra021836.1-P	Field mustard	cytosol	24.57	31.77
GSMUA_Achr10P...	Banana	cytosol	65.22	30.75
Zm00001d005373_P001	Maize	plastid	59.17	28.48

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EnsemblPlantsGene:Bra023694	EnsemblPlants:Bra023694.1	EnsemblPlants:Bra023694.1-P	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4E4J1
PFAM:PF00118	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF172	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000254320A	SEG:seg	:

Description

AT5G18820 (E=2e-288) EMB3007 | EMB3007 (embryo defective 3007); ATP binding / protein binding

Coordinates

chrA02:+:4569989..4572534

Molecular Weight (calculated)

61208.4 Da

IEP (calculated)

6.001

GRAVY (calculated)

0.039

Length

578 amino acids

Sequence
(BLAST)

001: MFAVSPSYFS PATISPSRSN QGKKPQLPRK LLVVRAGGKR ILYGKDSREA LQAGIDKLAD AVSVTLGPRG RNVVLAESDT IKVINDGVTI AKSIELPDTI
101: ENAGATLIQE VAIKMNESAG DGTTTAIILA REMIKAGSLA IAFGANAVSV KNGMNKTVKE LVRVLQMKSV PVKGKSDVKA VASISAGNDE FVGDLIAETV
201: EKIGPDGVIS IETSSTSETS VIVEEGMKFD KGYMSPHFIT NQEKSTVEFD KAKILVTDQK ITSAKELVPL LEKTSQLSVP LLIIAEDISA EVLEILVVNK
301: KQGLINVAVV KCPGMLDGKK ALLQDIALMT GADYLAGDLG MSLMGATSDQ LGVARKVTVT ANSTTIVADP STKPEIQARI AQMKKDLAET DNSYMTGKIA
401: ERIAKLSGGV AVIKVGGHTE TELEDRKLRI EDAKNATFAA MREGIVPGGG ATYIHLLDEI PRIKKTLMED LYEQIGADIV ATALTAPAMV IATNAGVDGS
501: VVVEKTRELE WRSGYNAMSG RYEDLINAGI ADPCKVSRFA LQNAVSVAGI VLTTQAVLVE KIKQPKPAVP EVPGIPTS

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.