Factsheet for Bra030858.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02438	Canola	cytosol	97.97	96.84
AT1G55490.3	Thale cress	plastid	83.89	96.33
Bra011919.1-P	Field mustard	plastid	84.47	95.72
Bra001507.1-P	Field mustard	plastid	79.1	92.37
Zm00001d035937_P001	Maize	plastid	73.44	87.39
KRH13605	Soybean	nucleus	74.89	87.31
PGSC0003DMT400061700	Potato	extracellular	75.62	86.98
Solyc01g028810.2.1	Tomato	plastid	75.62	86.98
KRH43861	Soybean	plastid	74.6	86.82
EER89076	Sorghum	plastid	72.86	86.7
VIT_06s0004g00240.t01	Wine grape	plastid	76.2	86.35
Bra028922.1-P	Field mustard	plastid	73.29	85.45
TraesCS6B01G012000.1	Wheat	cytosol	50.8	85.16
Os06t0114000-02	Rice	plastid	73.88	84.69
Zm00001d045544_P002	Maize	plastid	73.58	84.5
HORVU7Hr1G006490.2	Barley	cytosol	67.92	84.48
TraesCS4A01G452700.2	Wheat	plastid	71.12	83.9
GSMUA_Achr3P27620_001	Banana	plastid	74.46	83.82
GSMUA_Achr9P23240_001	Banana	plastid	74.46	83.82
HORVU4Hr1G076680.1	Barley	cytosol	23.8	82.83
HORVU5Hr1G074160.1	Barley	cytosol	23.22	82.05
TraesCS6A01G006400.1	Wheat	golgi	70.68	81.44
TraesCS7A01G036200.2	Wheat	golgi	73.15	81.29
Os02t0102900-01	Rice	plastid	70.54	81.27
HORVU2Hr1G107410.2	Barley	cytosol	23.51	81.0
TraesCS6B01G011800.1	Wheat	plastid	69.52	80.78
TraesCS6D01G009100.1	Wheat	golgi	70.1	80.77
TraesCS6B01G012100.3	Wheat	plastid	69.81	80.17
KXG29249	Sorghum	plastid	70.25	80.13
TraesCS7D01G032800.1	Wheat	cytosol	72.86	79.81
Zm00001d054089_P002	Maize	plastid	69.38	77.47
Zm00001d016540_P001	Maize	cytosol	11.61	76.92
TraesCS6B01G039300.2	Wheat	plastid	65.6	75.59
TraesCS6A01G028100.1	Wheat	plastid	65.46	75.42
TraesCS6D01G031400.1	Wheat	plastid	65.17	75.08
CDY10557	Canola	endoplasmic reticulum, plastid	89.99	74.79
HORVU6Hr1G005220.3	Barley	plastid	64.88	74.75
GSMUA_Achr11P...	Banana	plastid	75.33	74.57
Zm00001d053279_P001	Maize	mitochondrion	16.84	73.89
Zm00001d046709_P001	Maize	mitochondrion	16.55	72.61
HORVU6Hr1G000180.2	Barley	plastid	66.91	70.81
HORVU4Hr1G066820.2	Barley	cytosol	23.51	68.94
Zm00001d037526_P001	Maize	plastid	17.13	66.67
Bra012462.1-P	Field mustard	plastid	54.14	61.45
Bra027431.1-P	Field mustard	cytosol	44.7	59.34
Bra000498.1-P	Field mustard	mitochondrion	39.77	51.22
Bra034383.1-P	Field mustard	plastid	41.36	48.72
Bra011985.1-P	Field mustard	plastid	41.22	48.55
Bra001934.1-P	Field mustard	mitochondrion	38.17	45.58
Bra023694.1-P	Field mustard	plastid	37.45	44.64
Bra022931.1-P	Field mustard	mitochondrion	35.41	43.81
Bra005514.1-P	Field mustard	mitochondrion	35.41	43.65
Bra001524.1-P	Field mustard	mitochondrion	35.41	42.66
Bra021836.1-P	Field mustard	cytosol	22.93	35.35
Os02t0103100-01	Rice	plasma membrane, vacuole	0.29	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EnsemblPlantsGene:Bra030858	EnsemblPlants:Bra030858.1	EnsemblPlants:Bra030858.1-P	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M4EPY7	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI0002547069	SEG:seg	:	:	:	:

Description

AT1G55490 (E=1e-307) CPN60B, LEN1 | CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding

Coordinates

chrA08:+:343619..347864

Molecular Weight (calculated)

73974.2 Da

IEP (calculated)

5.373

GRAVY (calculated)

-0.330

Length

689 amino acids

Sequence
(BLAST)

001: MNKSRSPGHK ELTNVGGSGD TLIQQEHEDD ESNGGQEEDR NEMNKENEEH SDKENEEEER EAKELRRSNH LRKSPNNYSP SLIKPNNETM ASTFTATSSI
101: GSMVAPNAHK TDKKLMNKLS SSSFGRRQNV FPKLRRSSPA VVCAAKELHF NKDGTTIRKL QAGVNKLADL VGVTLGPKGR NVVLESKYGS PRIVNDGVTV
201: AREVELEDPV ENIGAKLVRQ AAAKTNDLAG DGTTTSVVLA QGFIAEGVKV VAAGANPVLI TRGIEKTAKA LVAELKKMSK EVEDSELADV AAVSAGNNAE
301: IGSMIAEAMS RVGRKGVVTL EEGKSAENAL YVVEGMQFDR GYVSPYFVTD SEKMSVEFDN CKLLLVDKKI TNARDLVGVL EDAIRGGYPI LIIAEDIEQE
401: ALATLVVNKL RGTLKIAALK APGFGERKSQ YLDDIAILTG ATVIREEVGL SLDKAGKEVL GHAAKVVLTK ETSTIVGDGS TQDAVQKRVT QIKNLIEQAE
501: QDYEKEKLNE RIAKLSGGVA VIQVGAQTET ELKEKKLRVE DALNATKAAV EEGIVVGGGC TLLRLASKVD AIKAALDNDE EKVGADIVKR ALSYPLKLIA
601: KNAGVNGSVV SEKVLSNDNV KFGYNAATGK YEDLMAAGII DPTKVVRCCL EHAASVAKTF LMSDCVVVEI KEPEPVPVGN PMDNSGYGY

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.