CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50415	Soybean	plastid	94.91	95.23
VIT_01s0011g01680.t01	Wine grape	plastid	76.06	76.84
AT5G18820.1	Thale cress	plastid	70.12	71.83
CDY47184	Canola	plastid	69.95	71.28
Bra023694.1-P	Field mustard	plastid	69.61	70.93
PGSC0003DMT400027020	Potato	cytosol	64.52	70.9
CDY02601	Canola	plastid	69.44	70.76
Solyc02g068730.2.1	Tomato	plastid	69.61	70.33
Os09t0563300-02	Rice	plastid	59.59	60.1
EER96340	Sorghum	plastid	58.57	58.97
TraesCS5A01G366800.1	Wheat	plastid	59.08	58.88
HORVU0Hr1G038830.17	Barley	plastid	58.74	58.64
TraesCS5B01G368900.1	Wheat	plastid	58.74	58.64
KRH25068	Soybean	nucleus	57.89	58.39
TraesCS5D01G376000.1	Wheat	plastid	58.23	58.14
KRH30612	Soybean	endoplasmic reticulum	54.16	53.79
KRH13605	Soybean	nucleus	43.29	43.15
KRH43861	Soybean	plastid	42.95	42.74
KRH34594	Soybean	mitochondrion	37.01	37.78
KRH33513	Soybean	mitochondrion	36.67	37.57
KRG92192	Soybean	mitochondrion	36.67	37.57
KRG90277	Soybean	mitochondrion	36.67	37.57
KRH75202	Soybean	plastid	38.03	37.02
KRH47114	Soybean	mitochondrion	35.99	36.93
KRH44140	Soybean	mitochondrion	35.82	36.76
KRH71056	Soybean	plastid	37.52	36.53
GSMUA_Achr10P...	Banana	cytosol	65.36	31.4
Zm00001d005373_P001	Maize	plastid	58.91	28.89
KRH01342	Soybean	cytosol	7.81	28.75

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:100795157	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	EMBL:ACUP02012206	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_20G019400
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006458
GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:K7N0U2	EnsemblPlants:KRG89369	ProteinID:KRG89369	ProteinID:KRG89369.1	PFAM:PF00118
PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF172	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000233DA24	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:2029368..2036280

Molecular Weight (calculated)

62894.4 Da

IEP (calculated)

7.466

GRAVY (calculated)

0.071

Length

589 amino acids

Sequence
(BLAST)

001: MSSHVSLSSS LFFFPPNNKN PSFSSFSPFR WNQTVAFGVR KTPRFVVCAG PKKILFGKEC REALQAGIDK LADAVSLTVG PKGRNVILSE SGNLKVINDG
101: VTIARSIELS DAIENAGAIL IQEVASKMNE LAGDGTSTAI ILARAMIKSG LLAVAFGANP ISLKKGMEKT VKELVKFLKE RSVPVEGREH IKAVASISAG
201: NDEYVGNLIA EAMDKIGSDG VISIESSSSS ETSVIIEEGM KFNKGYMSPH FITNQEKSIV EFDWVKVLVT DQKISNVKEI VPLLEKAMQL NAPLLIIAED
301: ITKQVLETLV VNKMQGLLRV AVVKCPGFGG AKKALLQDIA LMTGADFLSG DLGLTLDCAT SDQLGTALKV RITCNETTII ADPSLKAEIQ ARISQIKKDL
401: SETDNANLSR KLSERIAKLS GGVAVIKVGA HTELELEDRK LRIEDAKNAT FAAISEGIVP GGGATYVHLL DLIPTIRNSM EDLDEQIGAD IVAKALLEPA
501: KSIATNAGVD GDIVVRKTRT HDWRTGYNAM TGTYEDLLNA GVADPSRVAR CALQSAVSVA GVILTTQAIL VDKIKKPKPP VPLVPGITP

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.