CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89462
KRH50502

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	KRG89462	AT5G56360.1	21798944
AT3G13860.1	KRH50502	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44140	Soybean	mitochondrion	96.52	96.52
PGSC0003DMT400006642	Potato	cytosol	73.69	82.78
VIT_09s0002g02240.t01	Wine grape	mitochondrion	77.87	81.13
CDX82514	Canola	mitochondrion	78.75	79.02
Bra001524.1-P	Field mustard	mitochondrion	78.57	78.85
CDX75733	Canola	mitochondrion	78.57	78.85
AT3G13860.1	Thale cress	mitochondrion	78.22	78.5
GSMUA_Achr7P24090_001	Banana	cytosol	72.3	78.3
Solyc03g121640.2.1	Tomato	plastid	77.53	77.66
KRG90277	Soybean	mitochondrion	70.91	70.78
KRH33513	Soybean	mitochondrion	70.73	70.61
KRG92192	Soybean	mitochondrion	70.38	70.26
KRH34594	Soybean	mitochondrion	70.56	70.19
Zm00001d038857_P001	Maize	mitochondrion	70.21	69.48
Os05t0540300-01	Rice	mitochondrion	70.21	69.36
EES19881	Sorghum	mitochondrion	70.03	69.19
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	69.69	68.85
TraesCS1D01G365800.1	Wheat	mitochondrion	69.16	68.69
TraesCS1A01G361400.1	Wheat	mitochondrion	68.82	68.22
TraesCS1B01G378000.1	Wheat	mitochondrion	69.16	68.1
KRH13605	Soybean	nucleus	43.73	42.47
KRH43861	Soybean	plastid	43.55	42.23
KRH25068	Soybean	nucleus	39.9	39.21
KRH71056	Soybean	plastid	39.37	37.36
KRH75202	Soybean	plastid	39.2	37.19
KRH30612	Soybean	endoplasmic reticulum	37.98	36.76
KRH50415	Soybean	plastid	36.93	36.12
KRG89369	Soybean	plastid	36.93	35.99
KRH01342	Soybean	cytosol	6.27	22.5

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100787285	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02004135
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_07G009600	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183
GO:GO:0045041	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	UniProt:I1KGB8
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH47114	ProteinID:KRH47114	ProteinID:KRH47114.1
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00023C7EB9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:718009..725377

Molecular Weight (calculated)

61183.9 Da

IEP (calculated)

7.594

GRAVY (calculated)

-0.102

Length

574 amino acids

Sequence
(BLAST)

001: MYRLARRVGS SIASPSAKNL VYGGVLSSRN FVSKDINFGV GARAAILHGV TEVADAVKVT MGPKGRNVII ERSRGNPRIT KDGVTVAKSI KFKDKSKNVG
101: ADLVKQVAKA TNTAAGDGTT CATVLTQAIL TEGCKSIAAG VNVMDLRHGI NKAVDAVITE LKRRALMIST SEEITQVGTI SANGERDIGE LIARAMEKVG
201: KEGVITVVDG NTLDNKLEVV EGMKLTRGYI SPYFITDQKT QKCELENPFI LIHDKKISDI NSLLKILELA VTKKRPLLVV AEDVESDALA MLILNKHHAG
301: LKVCAVKAPG FGDNRRASLD DLAILTGGEV ITDERGLALD KVQPEMLGTA KKVTITIDDT IILHGGGDKK VIEERCEQLR TAMEKSSATF DKEKAQERLS
401: KLSGGVAVFK VGGASEAEVG ERKDRVTDAL NATRAAVEEG IVPGGGVALL YATKVLDNLQ TQNEDEKRGV QIIQNALKAP TITIASNAGF DGALVHSKLL
501: EQDDHNLGFD AAKGVYADMV KAGIIDPLKV VRTALVDAAS VSLLLTTTEA AVVDNSHDKN KPPSRVPDMD DLDL

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.