CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30612	Soybean	endoplasmic reticulum	92.64	91.23
Bra000498.1-P	Field mustard	mitochondrion	81.51	88.97
CDY68896	Canola	cytosol	50.86	88.13
VIT_06s0061g00270.t01	Wine grape	plastid	88.01	87.71
Bra034383.1-P	Field mustard	plastid	87.33	87.18
CDX83280	Canola	plastid	86.64	86.94
CDY30514	Canola	plastid	86.99	86.84
CDY31190	Canola	plastid	86.99	86.69
Bra011985.1-P	Field mustard	plastid	86.47	86.32
Os03t0859600-01	Rice	plastid	46.06	86.22
Solyc11g069790.1.1	Tomato	plastid	86.13	85.54
AT2G28000.1	Thale cress	plastid	85.62	85.32
GSMUA_Achr11P...	Banana	plastid	85.1	84.81
CDY04527	Canola	plastid	86.47	84.73
Os12t0277500-01	Rice	plastid	83.73	84.6
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	85.1	84.52
GSMUA_AchrUn_...	Banana	plastid	82.88	83.88
EES19317	Sorghum	plastid	82.53	83.54
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	81.34	82.18
Zm00001d000399_P001	Maize	plastid	82.02	82.02
TraesCS2D01G049500.1	Wheat	golgi, plastid	81.16	82.01
HORVU5Hr1G125130.1	Barley	plastid	82.19	81.77
TraesCS4A01G315500.2	Wheat	plastid	81.85	81.57
CDX77147	Canola	plastid	86.82	81.51
TraesCS5D01G550700.1	Wheat	plastid	82.02	81.46
EER90466	Sorghum	plastid	80.82	81.38
TraesCS5B01G563900.2	Wheat	plastid	81.85	81.29
CDX71396	Canola	plastid	73.46	81.1
Zm00001d034919_P001	Maize	plastid	79.97	79.97
HORVU2Hr1G011340.1	Barley	cytosol	22.26	78.79
HORVU2Hr1G109400.1	Barley	cytosol	12.33	78.26
Solyc06g075010.2.1	Tomato	plastid	78.08	77.42
PGSC0003DMT400031301	Potato	plastid	78.08	77.42
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	81.51	76.28
Os03t0859700-00	Rice	extracellular, plastid	23.46	74.05
Zm00001d051252_P001	Maize	cytosol	22.43	63.9
KRG89369	Soybean	plastid	58.39	57.89
KRH50415	Soybean	plastid	57.53	57.24
KRH43861	Soybean	plastid	48.8	48.14
KRH13605	Soybean	nucleus	48.46	47.88
KRH33513	Soybean	mitochondrion	44.18	44.87
KRG90277	Soybean	mitochondrion	44.18	44.87
KRH34594	Soybean	mitochondrion	43.84	44.37
KRG92192	Soybean	mitochondrion	43.15	43.83
KRH75202	Soybean	plastid	43.84	42.31
KRH71056	Soybean	plastid	43.66	42.15
KRH47114	Soybean	mitochondrion	39.21	39.9
KRH44140	Soybean	mitochondrion	38.53	39.2
KRH01342	Soybean	cytosol	8.22	30.0

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EMBL:ACUP02007199	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_12G078100
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457
GO:GO:0006458	GO:GO:0007005	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658
GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	UniProt:I1LR60	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
EnsemblPlants:KRH25068	ProteinID:KRH25068	ProteinID:KRH25068.1	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000233D740	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:6087294..6091053

Molecular Weight (calculated)

61708.1 Da

IEP (calculated)

5.038

GRAVY (calculated)

-0.059

Length

584 amino acids

Sequence
(BLAST)

001: MASTNALSSA SILRSPNRQS LTRRANHNGR VNYRKPNNRF SVKASAKEIA FDQHSRSAMQ AGIDKLADAV GLTLGPRGRN VVLDEFGSPK VVNDGVTIAR
101: AIELPDPMEN AGAALIREVA SKTNDSAGDG TTTASVLARE IIKLGLLSVT SGANPVSLKR GIDKTVQGLV EELEKKARPV KGGDDIKAVA SISAGNDELI
201: GQMIAEAIDK VGPDGVLSIE SSSSFETTVE VEEGMEIDRG YISPQFVTNP EKLIVEFENA RVLITDQKIS AIKDIIPLLE KTTQLRAPLL IIAEDVTGEA
301: LATLVVNKLR GILNVAAIKA PGFGERRKAL LQDIAILTGA EFQASDLGLL VENTSVEQLG LARKITISKD STTVIADAAT KDELQARVAQ LKKELSQTDS
401: VYDTEKLAER IAKLSGGVAV IKVGAATETE LEDRKLRIED AKNATFAAIE EGIVPGGGTA LVHLSTHVPA IKDKLEDADE RLGADIVQKA LIAPAALIAQ
501: NAGIEGEVVV EKIKSGEWEV GYNAMADRYE NLVEAGVIDP AKVTRCALQN AASVAGMVLT TQAIVVEKPK PKAPVAGAPQ GLTV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.