Factsheet for PGSC0003DMT400006642

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	PGSC0003DMT400011814	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121640.2.1	Tomato	plastid	99.22	88.48
GSMUA_Achr7P24090_001	Banana	cytosol	81.21	78.3
VIT_09s0002g02240.t01	Wine grape	mitochondrion	82.58	76.59
KRH47114	Soybean	mitochondrion	82.78	73.69
CDX82514	Canola	mitochondrion	82.0	73.25
AT3G13860.1	Thale cress	mitochondrion	82.0	73.25
Bra001524.1-P	Field mustard	mitochondrion	81.8	73.08
CDX75733	Canola	mitochondrion	81.8	73.08
KRH44140	Soybean	mitochondrion	81.8	72.82
PGSC0003DMT400069855	Potato	mitochondrion	76.32	68.06
Zm00001d038857_P001	Maize	mitochondrion	76.13	67.07
EES19881	Sorghum	mitochondrion	75.93	66.78
PGSC0003DMT400030265	Potato	mitochondrion	74.76	66.43
Os05t0540300-01	Rice	mitochondrion	75.15	66.09
TraesCS1D01G365800.1	Wheat	mitochondrion	74.36	65.74
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	74.56	65.58
TraesCS1A01G361400.1	Wheat	mitochondrion	74.17	65.46
TraesCS1B01G378000.1	Wheat	mitochondrion	74.17	65.01
PGSC0003DMT400061700	Potato	extracellular	45.79	39.07
PGSC0003DMT400006501	Potato	plastid	45.99	38.84
PGSC0003DMT400064673	Potato	cytosol	33.46	37.92
PGSC0003DMT400031301	Potato	plastid	41.29	35.82
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	41.1	35.71
PGSC0003DMT400027020	Potato	cytosol	35.81	34.14

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0042026	GO:GO:0046686
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0ZRS0
PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400002585	PGSC:PGSC0003DMG400002585	EnsemblPlants:PGSC0003DMT400006642	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02348	UniParc:UPI000294D68C	SEG:seg	:	:	:

Description

Chaperonin-60kD, ch60 [Source:PGSC_GENE;Acc:PGSC0003DMG400002585]

Coordinates

chr3:+:60935887..60943401

Molecular Weight (calculated)

54089.6 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.020

Length

511 amino acids

Sequence
(BLAST)

001: MLQGVNELAE AVKVTMGPKG RNVIIEKSPG NPKVTKDGVT VAKSINFKEK AKNVGADLVK QVANATNSVA GDGTTCATVL TQAIFTEGCK AVAAGVSVMD
101: LRNGINMAID AVVADLKSRA VMISTPEEIT QVGTISANGE REIGEIIARA MEKVGKEGVI TVADGNTLDN DLEVVEGMKL GRGYISPYFV TDEKTQKCEL
201: ENPLILIHDK KISDLNSLVQ ILELALKRRR PLLIVAEDVE SDALAMLILN KHRAGIKVCA IKAPGFGDNR RANLEDLAVL TGGEVISEER GLDLNKVQFD
301: MLGTAKKVTV SLDDTLVLHG GGDKKLIEER CEQLRIAKEK SSAMFDKEKA QERLSKLSGG VAVFKVGGAS EAEVGERKDR VTDALNATRA AVEEGIVPGG
401: GVALLYATKC LKGLQTANDG QKRGVEIIEN ALKAPTFTIA SNAGADGALV VGKLLEQDDL NLGYDAAKGT YLHMVKAGII DPVKVVRTAL VDAASVSLLL
501: TTAEAAIVDR Q

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.