Factsheet for PGSC0003DMT400006501

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120850.2.1	Tomato	plastid	98.02	98.02
VIT_09s0002g03930.t01	Wine grape	plastid	85.12	84.56
Zm00001d035937_P001	Maize	plastid	79.83	83.42
PGSC0003DMT400061700	Potato	extracellular	82.31	83.14
TraesCS6B01G012000.1	Wheat	cytosol	56.36	82.97
EER89076	Sorghum	plastid	79.01	82.56
HORVU7Hr1G006490.2	Barley	cytosol	75.54	82.49
TraesCS4A01G452700.2	Wheat	plastid	78.84	81.68
Os06t0114000-02	Rice	plastid	80.83	81.36
GSMUA_Achr3P27620_001	Banana	plastid	81.82	80.88
HORVU4Hr1G076680.1	Barley	cytosol	26.28	80.3
GSMUA_Achr9P23240_001	Banana	plastid	81.16	80.23
Zm00001d045544_P002	Maize	plastid	79.34	80.0
HORVU2Hr1G107410.2	Barley	cytosol	26.12	79.0
HORVU5Hr1G074160.1	Barley	cytosol	25.45	78.97
TraesCS7A01G036200.2	Wheat	golgi	80.33	78.39
TraesCS6A01G006400.1	Wheat	golgi	77.02	77.93
Os02t0102900-01	Rice	plastid	76.86	77.76
TraesCS6D01G009100.1	Wheat	golgi	76.69	77.59
TraesCS7D01G032800.1	Wheat	cytosol	80.5	77.42
TraesCS6B01G011800.1	Wheat	plastid	75.7	77.23
TraesCS6B01G012100.3	Wheat	plastid	76.2	76.83
KXG29249	Sorghum	plastid	76.69	76.82
Zm00001d054089_P002	Maize	plastid	75.7	74.23
Zm00001d016540_P001	Maize	cytosol	12.4	72.12
TraesCS6A01G028100.1	Wheat	plastid	70.58	71.4
TraesCS6B01G039300.2	Wheat	plastid	70.58	71.4
TraesCS6D01G031400.1	Wheat	plastid	70.41	71.24
HORVU6Hr1G005220.3	Barley	plastid	70.41	71.24
Zm00001d053279_P001	Maize	mitochondrion	18.18	70.06
GSMUA_Achr11P...	Banana	plastid	79.83	69.4
Zm00001d046709_P001	Maize	mitochondrion	17.69	68.15
HORVU6Hr1G000180.2	Barley	plastid	71.07	66.05
HORVU4Hr1G066820.2	Barley	cytosol	25.45	65.53
Zm00001d037526_P001	Maize	plastid	18.51	63.28
PGSC0003DMT400064673	Potato	cytosol	46.94	62.97
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	46.45	47.79
PGSC0003DMT400031301	Potato	plastid	45.29	46.52
PGSC0003DMT400006642	Potato	cytosol	38.84	45.99
PGSC0003DMT400030265	Potato	mitochondrion	42.98	45.22
PGSC0003DMT400027020	Potato	cytosol	40.0	45.15
PGSC0003DMT400069855	Potato	mitochondrion	42.31	44.68
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:102577751	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	ProteinID:AAB39828	ProteinID:AAB39828.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M0ZRG6	HAMAP:MF_00600	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400002537	PGSC:PGSC0003DMG400002537	EnsemblPlants:PGSC0003DMT400006501
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF96	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EMBL:U46137	UniParc:UPI0002958156	RefSeq:XP_006343054.1

Description

Rubisco subunit binding-protein beta subunit, rubb [Source:PGSC_GENE;Acc:PGSC0003DMG400002537]

Coordinates

chr3:-:60169898..60175348

Molecular Weight (calculated)

64316.1 Da

IEP (calculated)

5.296

GRAVY (calculated)

-0.140

Length

605 amino acids

Sequence
(BLAST)

001: MAATFTSVCS IASTNQTVDK KFINSSETLS SFSGISLTSL GGRRKNKVLK KRNDSKIQAM AKKLHFNQDG SAIKKLQAGV NKLADLVGVT LGPKGRNVVL
101: ESKYGSPKIV NDGVTVAREV ELEDPVENIG ASLVRQAASK TNDLAGDGTT TSVVLAQGLI TEGVKVVAAG ANPIQIAKGI DRTTKALVSE LKNMSKEVED
201: SELADVAAVS AGNNYEVGNM IAEALSKVGR KGVVTLEEGR GSENNLFVVE GMQFDRGYIS PYFVTDNEKM VAEYENCKLL LVDKKITNAR DLVNVLEEAI
301: KNGYPILVIA EDIEQEALAT LVVNKLRGAL KIAALKAPGF GDRKSQYLDD IAILTGGTVI REEVGLYLDQ AGSEVLGNAA KVVLSKDSTT IVGDGSTQDA
401: VSKRVAQIKR LLEEAEQDYE KEKLNERIAK LSGGVAVIQV GAQTETELKE KKLRVEDALN ATKAAVDEGI VVGGGCTLLR LAAKVEDIKG TLDNDEQKIG
501: ADIVKRALRY PMKLIAKNAG VNGSVVIEKV LSNDNPNYGY NAATGNYEDL MAAGIIDPTK VVRCCLEHAA SVARTFLTSD AVVTEIKVPE PAVAGNPMDN
601: SGYGP

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.