Factsheet for VIT_09s0002g03930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00240.t01	Wine grape	plastid	89.33	89.47
TraesCS6B01G012000.1	Wheat	cytosol	58.78	87.1
Zm00001d035937_P001	Maize	plastid	82.43	86.7
EER89076	Sorghum	plastid	81.94	86.18
GSMUA_Achr3P27620_001	Banana	plastid	86.37	85.95
GSMUA_Achr9P23240_001	Banana	plastid	86.37	85.95
Solyc03g120850.2.1	Tomato	plastid	84.56	85.12
PGSC0003DMT400006501	Potato	plastid	84.56	85.12
HORVU7Hr1G006490.2	Barley	cytosol	77.01	84.66
Os06t0114000-02	Rice	plastid	83.25	84.36
HORVU4Hr1G076680.1	Barley	cytosol	27.42	84.34
TraesCS4A01G452700.2	Wheat	plastid	80.62	84.08
Zm00001d045544_P002	Maize	plastid	82.43	83.67
TraesCS6A01G006400.1	Wheat	golgi	81.61	83.11
HORVU2Hr1G107410.2	Barley	cytosol	27.09	82.5
TraesCS6D01G009100.1	Wheat	golgi	80.95	82.44
TraesCS6B01G011800.1	Wheat	plastid	79.97	82.12
HORVU5Hr1G074160.1	Barley	cytosol	26.27	82.05
Os02t0102900-01	Rice	plastid	80.46	81.94
TraesCS7A01G036200.2	Wheat	golgi	82.92	81.45
TraesCS6B01G012100.3	Wheat	plastid	80.13	81.33
KXG29249	Sorghum	plastid	80.62	81.29
TraesCS7D01G032800.1	Wheat	cytosol	82.76	80.13
Zm00001d054089_P002	Maize	plastid	79.47	78.44
Zm00001d016540_P001	Maize	cytosol	12.97	75.96
TraesCS6A01G028100.1	Wheat	plastid	74.06	75.42
TraesCS6D01G031400.1	Wheat	plastid	73.56	74.92
TraesCS6B01G039300.2	Wheat	plastid	73.56	74.92
HORVU6Hr1G005220.3	Barley	plastid	73.56	74.92
GSMUA_Achr11P...	Banana	plastid	85.22	74.57
Zm00001d053279_P001	Maize	mitochondrion	18.55	71.97
Zm00001d046709_P001	Maize	mitochondrion	18.23	70.7
HORVU6Hr1G000180.2	Barley	plastid	75.37	70.51
HORVU4Hr1G066820.2	Barley	cytosol	26.77	69.36
Zm00001d037526_P001	Maize	plastid	19.05	65.54
VIT_01s0010g00920.t01	Wine grape	mitochondrion	64.7	64.59
VIT_06s0061g00270.t01	Wine grape	plastid	47.45	49.32
VIT_05s0051g00340.t01	Wine grape	mitochondrion	45.98	48.7
VIT_09s0002g02240.t01	Wine grape	mitochondrion	40.23	44.46
VIT_01s0011g01680.t01	Wine grape	plastid	42.53	44.43
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:100261815	wikigene:100261815	MapMan:19.1.7.1
Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:CBI36094	ProteinID:CBI36094.3	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	UniProt:D7U0E8	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100261815	wikigene:LOC100261815	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF96	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	TIGR:TC64620	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001983FD6	ArrayExpress:VIT_09s0002g03930
EnsemblPlantsGene:VIT_09s0002g03930	EnsemblPlants:VIT_09s0002g03930.t01	unigene:Vvi.2032	RefSeq:XP_002284134	RefSeq:XP_002284134.1	RefSeq:XP_010654639.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:3642174..3646584

Molecular Weight (calculated)

65014.1 Da

IEP (calculated)

5.416

GRAVY (calculated)

-0.120

Length

609 amino acids

Sequence
(BLAST)

001: MASSFATMSS IGYFTSSSSH TMDKKFLGSS RRLSSFASIS ANSFEGRKQS MVLQKRCSPK VRAMAKELYF NKDGSAIKKL QTGVNKLADL VGVTLGPKGR
101: NVVLESKYGS PKIVNDGVTV AREVELEDPV ENIGARLVRQ AASKTNDLAG DGTTTSVVLA QGLITEGVKV VAAGANPVQI TRGIENTTKA LVAELKLMSK
201: EVEDSELADV AAVSAGNNYE VGYMIAEAMG QVGRKGVVTL EEGKSAENNL YVVEGMQFDR GYISPYFVTD SEKMAVEYEN CKLLLVDKKI TNARDLINVL
301: EDAIKGGYPI LIIAEDIEQE ALATLVVNKL RGALKIAALK APGFGERKSQ YLDDIAILTG GTVIREEVGL SLDKAEKEVL GHAAKVVLTK DTTTIVGDGS
401: TQEAVNKRVA QIRNLVEAAD QDYEKEKLNE RIAKLSGGVA VIQVGAQTET ELKEKKLRVE DALNATKAAV EEGIVVGGGC TLLRLAAKVD AIKDTLDSDE
501: QKVGADIVKR ALSYPMKLIA KNAGVNGSVV IEKVLSSDNP KYGYNAATGK YEDLMAAGII DPTKVVRCCL EHAASVARTF LTSDAVVVDI KEPEPIPAGN
601: PMDNSGYGY

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.