Factsheet for TraesCS1B01G378000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G189400.3
TraesCS3B01G218600.2
TraesCS3D01G192900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	TraesCS3A01G189400.3	AT5G56360.1	21798944
AT3G13860.1	TraesCS3B01G218600.2	AT5G56360.1	21798944
AT3G13860.1	TraesCS3D01G192900.1	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G361400.1	Wheat	mitochondrion	98.63	99.31
TraesCS1D01G365800.1	Wheat	mitochondrion	98.11	98.96
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	96.4	96.73
EES19881	Sorghum	mitochondrion	87.99	88.3
Os05t0540300-01	Rice	mitochondrion	87.31	87.61
Zm00001d038857_P001	Maize	mitochondrion	87.14	87.59
PGSC0003DMT400006642	Potato	cytosol	65.01	74.17
GSMUA_Achr7P24090_001	Banana	cytosol	67.24	73.96
VIT_09s0002g02240.t01	Wine grape	mitochondrion	68.27	72.23
Solyc03g121640.2.1	Tomato	plastid	68.95	70.16
CDX82514	Canola	mitochondrion	68.44	69.76
Bra001524.1-P	Field mustard	mitochondrion	68.27	69.58
CDX75733	Canola	mitochondrion	68.27	69.58
KRH47114	Soybean	mitochondrion	68.1	69.16
AT3G13860.1	Thale cress	mitochondrion	67.75	69.06
KRH44140	Soybean	mitochondrion	67.92	68.99
TraesCS1B01G162300.1	Wheat	mitochondrion	66.9	67.94
TraesCS4B01G307700.1	Wheat	mitochondrion	67.07	67.88
TraesCS4B01G266200.1	Wheat	cytosol	34.82	48.92
TraesCS6B01G012000.1	Wheat	cytosol	31.22	44.28
TraesCS6B01G011800.1	Wheat	plastid	43.22	42.5
TraesCS6B01G012100.3	Wheat	plastid	42.88	41.67
TraesCS6B01G039300.2	Wheat	plastid	42.54	41.47
TraesCS5B01G563900.2	Wheat	plastid	40.14	39.8
TraesCS5B01G368900.1	Wheat	plastid	37.56	37.12
TraesCS2B01G328500.3	Wheat	plastid	37.39	36.82

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773
GO:GO:0005774	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0042026
GO:GO:0046686	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS1B01G378000
EnsemblPlants:TraesCS1B01G378000.1	TIGR:cd03344	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:-:610171257..610176258

Molecular Weight (calculated)

61616.4 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.098

Length

583 amino acids

Sequence
(BLAST)

001: MYRAAAAAIS RSSSSALRRQ LARGGFGGGG GEQRQWVRGY AAKEVTFGVG ARAAMLRGVN DLADAVKVTM GPKGRNVVIE RSNRSPKVTK DGVTVAKSIE
101: FEDSAKNVGA SLVKQVADAT NKAAGDGTTC ATVLTQAILT EGCKAVAAGV NVMDLRKGIN KAISAVTAHL KSKAWMIDSP DEINQVATIS ANGEKEIGDL
201: ISKAMGIVGK DGVITIADGK TLDNELEAVQ GMKLTRGYIS PYFVTDQKTQ KCELKDPLIL IHDKKISNMN SLLPAVQISI QNRRPLLIFA EDVDGEALSM
301: LVLNKHRAGL KICAVKAPGF GENRRANLDD MAVLTGGQVI SEDQGLDLDK VELQMLGTAK KVTVSLDDTI ILDGGGERQQ IEERCQQLRE SLENSTSMFD
401: KEKAQERLSK LSGGVAILKI GGASEAEVGE KKDRVTDALN AARAAVEEGI VPGGGVALLY ATKEIDNIST SHEDEKIGVQ IIKNALKAPL MTIAANAGID
501: GAIVIGKLLE QDNLSLGYDA AKGEYVDMIK AGIIDPVKVI RTALQDAASV SLLMTTTEAA VAELPSTKAR IASRMPDMSG MGF

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.