Factsheet for TraesCS2B01G328500.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G310000.3	Wheat	plastid	97.8	98.81
HORVU2Hr1G077410.18	Barley	plastid	97.64	97.31
TraesCS2A01G311700.1	Wheat	plastid	97.47	89.04
Os04t0443900-01	Rice	plastid	84.46	85.03
Zm00001d028409_P001	Maize	plastid	81.93	82.48
GSMUA_Achr9P18480_001	Banana	plastid	70.95	71.07
Solyc05g010240.2.1	Tomato	plastid	60.81	66.54
PGSC0003DMT400064673	Potato	cytosol	50.17	65.85
VIT_01s0010g00920.t01	Wine grape	mitochondrion	67.06	65.08
KRH75202	Soybean	plastid	65.71	64.3
KRH71056	Soybean	plastid	65.2	63.8
Bra012462.1-P	Field mustard	plastid	64.7	63.1
CDY20555	Canola	plastid	64.53	62.93
CDY66193	Canola	plastid	64.36	62.77
AT1G26230.1	Thale cress	plastid	64.7	62.68
TraesCS6B01G012000.1	Wheat	cytosol	42.06	60.58
TraesCS6B01G011800.1	Wheat	plastid	58.28	58.18
TraesCS6B01G012100.3	Wheat	plastid	58.78	58.0
TraesCS6B01G039300.2	Wheat	plastid	57.26	56.69
TraesCS5B01G563900.2	Wheat	plastid	41.39	41.67
TraesCS1B01G162300.1	Wheat	mitochondrion	38.51	39.72
TraesCS4B01G307700.1	Wheat	mitochondrion	37.84	38.89
TraesCS1B01G378000.1	Wheat	mitochondrion	36.82	37.39
TraesCS5B01G368900.1	Wheat	plastid	35.81	35.93
TraesCS4B01G266200.1	Wheat	cytosol	22.3	31.81

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS2B01G328500
EnsemblPlants:TraesCS2B01G328500.3	TIGR:cd03344	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:-:470913043..470916944

Molecular Weight (calculated)

63794.8 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.034

Length

592 amino acids

Sequence
(BLAST)

001: MSSMSRMPLP PSPPPSLSSK PPTLPFSPKK TPPMPVYKDL HFNHDLSATK KLQAGVDLVA RLVGVTLGPK GRNVVLANKY GPPKIVNDGE TVLKEIELED
101: PLENLGVKLV RQAGARTNDI AGDGCTTSII LAQGLIAEGM KVLAAGMNPV QIARGIGRTA DALVSELKLM SREIEDHEIA HVAAVSAGND YAVGNMISDA
201: FKRVGREGMV RIENGRSTVN SLEVVEGMQF ERGYLSPFFV TKHANMSAEY TDCKILLVDK IISDPRELLR VCFSAVKEDF PLLIIAEDVE EEALATLTRN
301: KLSGMIKVAA IKAPSFGEQK TQCLEDIAII TGGTVVRDDM GYTLEEAGKE FLGSASKVIV KKDSTLIVTD GSTLHAVEKR VAQIKGQVEN SKERYQKKIL
401: GERIARLSGA IAIIQVGAQT VIELKDKKLR IEDALNATMA AIEEGVVVGG GCSLLRLSQK IDMIKESLDN LEQKIGADIF KHALSYPTTL IANNAGMSGK
501: FVIEKVLSND NASYGYNAAN GCYEDLMASG ILDPSKVVRC CIEHSAVVAK SFLTSDVVIV EAQESKPVRI RPPMPPRNLI PPMPASVSGI RV

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.