Factsheet for TraesCS3B01G218600.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G180500.1
TraesCS6A01G298800.1
TraesCS6B01G328200.1
TraesCS6D01G164600.1
TraesCS6D01G278500.1
TraesCS7A01G200700.1
TraesCS7B01G107500.1
TraesCS7D01G204000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	TraesCS6A01G298800.1	AT1G68060.1	21798944
AT5G56360.1	TraesCS6B01G328200.1	AT1G68060.1	21798944
AT5G56360.1	TraesCS6D01G278500.1	AT1G68060.1	21798944
AT5G56360.1	TraesCS7A01G200700.1	AT1G68060.1	21798944
AT5G56360.1	TraesCS7B01G107500.1	AT1G68060.1	21798944
AT5G56360.1	TraesCS7D01G204000.1	AT1G68060.1	21798944
AT5G56360.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT5G56360.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	98.35	98.35
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	98.02	98.02
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	94.88	93.18
Os01t0276800-01	Rice	endoplasmic reticulum	80.17	78.99
KXG32260	Sorghum	endoplasmic reticulum	77.19	76.31
Zm00001d040449_P001	Maize	endoplasmic reticulum	31.9	65.42
Zm00001d008236_P004	Maize	endoplasmic reticulum	71.9	60.08
GSMUA_Achr10P...	Banana	endoplasmic reticulum	24.96	54.71
KRH50502	Soybean	endoplasmic reticulum	53.39	51.35
KRG89462	Soybean	endoplasmic reticulum	53.22	50.55
VIT_06s0004g00140.t01	Wine grape	endoplasmic reticulum	52.4	49.69
GSMUA_Achr5P27690_001	Banana	endoplasmic reticulum	55.87	49.63
CDY46579	Canola	endoplasmic reticulum	50.58	47.52
CDY32789	Canola	endoplasmic reticulum	50.08	47.27
Bra002821.1-P	Field mustard	endoplasmic reticulum	50.08	47.27
CDY11931	Canola	endoplasmic reticulum	50.91	47.17
AT5G56360.1	Thale cress	endoplasmic reticulum	49.92	46.68
Bra028933.1-P	Field mustard	endoplasmic reticulum	49.92	46.39
CDY36796	Canola	endoplasmic reticulum	49.75	46.24
PGSC0003DMT400011814	Potato	endoplasmic reticulum	46.45	44.46
Solyc12g099660.1.1	Tomato	unclear	45.79	43.42
TraesCS3B01G325900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	12.89	33.77

Protein Annotations

MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	Gene3D:4.10.400.10	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006491	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0019538	GO:GO:0042742
InterPro:Glucosidase_2_bsu	InterPro:IPR009011	InterPro:Man6P_isomerase_rcpt-bd_dom_sf	PFAM:PF12999	PFAM:PF13015	InterPro:PRKCSH
InterPro:PRKCSH_N	PANTHER:PTHR12630	PANTHER:PTHR12630:SF10	SUPFAM:SSF50911	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS3B01G218600
EnsemblPlants:TraesCS3B01G218600.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:261880058..261887619

Molecular Weight (calculated)

67822.6 Da

IEP (calculated)

4.382

GRAVY (calculated)

-0.965

Length

605 amino acids

Sequence
(BLAST)

001: MRVLALLLLL WISAAATASP PPLETLGIPP QDEAYYRGGV IKCRDGSGKF TRDQLNDDFC DCPDGTDEPG TSACPEAKFY CKNAGHSPIT IFSSRVNDGI
101: CDCCDGSDEY GSNSTCKNTC WEAGKAAREK LKKKVATYKS GVVIRNQEVE KAKLAIAKDE AELTKLKGEE KILQGLVDKL KEQKRLIEKA EEEERLIKEK
201: EEKRIKEEAE KQAAEENKAP DASQEADSQD TNEKAQEDES KVVEHHDGDI TDHDNHSPEG ETSVEVPDIK AGTGDDEPPV ETSAIPTEEQ DPTSVNSEGL
301: SKAELGRLVA SRWTGENVDD VGKSDKKGHE DELDIPEPAE EAFEDEHDIP EPVEENYAGY HSEVEDDRHK FEDEELSNVS DDEYVDDHEE PDVSYKSDDD
401: RKGDDHSDLT ASGQASWLDK IQQTVQNVLQ KFNFFKTPVD LSEAAHVRKE YDDASSKLSK IQSRITSLTD KLKQDFGKEK EFYYFYDQCF EGKEGKYVYK
501: VCPYKKASQV EGHSSTNLGR WDKFEESYRM MHFSNGDKCW NGPDRSLKVR LRCGLSNELN GVDEPSRCEY VAVLSTPAMC VEEKLKELQQ KLDAASSNLS
601: SHDEL

Best Arabidopsis Sequence Match ( AT5G56360.1 )
(BLAST)

001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL

Arabidopsis Description

PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.