Factsheet for GSMUA_Achr1P11160_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	90.48	90.96
VIT_05s0051g00340.t01	Wine grape	mitochondrion	89.62	90.09
KRG92192	Soybean	mitochondrion	89.1	89.57
KRH34594	Soybean	mitochondrion	88.93	89.08
KRH33513	Soybean	mitochondrion	88.58	89.04
Os10t0462900-01	Rice	mitochondrion	87.89	88.5
KRG90277	Soybean	mitochondrion	87.89	88.35
EER94121	Sorghum	mitochondrion	88.06	88.21
Zm00001d032789_P001	Maize	plastid	87.72	88.02
Zm00001d014090_P002	Maize	mitochondrion	87.54	87.69
Solyc05g053470.2.1	Tomato	plastid	86.33	87.09
AT3G23990.1	Thale cress	mitochondrion	86.85	87.0
TraesCS1B01G162300.1	Wheat	mitochondrion	86.33	86.93
PGSC0003DMT400069855	Potato	mitochondrion	86.16	86.91
TraesCS1D01G144000.1	Wheat	mitochondrion	86.16	86.76
TraesCS1A01G145000.1	Wheat	mitochondrion	86.16	86.76
Os03t0143400-01	Rice	mitochondrion	86.33	86.48
PGSC0003DMT400030265	Potato	mitochondrion	85.81	86.26
CDX94835	Canola	mitochondrion	85.99	86.14
Bra001934.1-P	Field mustard	mitochondrion	85.64	85.79
CDX93002	Canola	mitochondrion	81.49	85.64
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	85.64	85.49
TraesCS4A01G409100.1	Wheat	mitochondrion	84.78	85.07
CDY72107	Canola	mitochondrion	45.16	85.02
TraesCS4B01G307700.1	Wheat	mitochondrion	84.6	84.9
CDX84697	Canola	mitochondrion	82.35	84.55
CDX79518	Canola	cytosol	29.24	83.66
Bra022931.1-P	Field mustard	mitochondrion	80.45	83.48
AT2G33210.1	Thale cress	mitochondrion	84.43	83.42
KXG40202	Sorghum	cytosol	58.65	83.29
CDY59050	Canola	cytosol	48.27	82.54
Bra005514.1-P	Field mustard	mitochondrion	79.58	82.29
CDY17152	Canola	mitochondrion	81.14	81.71
CDY19471	Canola	mitochondrion	83.74	81.62
HORVU4Hr1G078820.3	Barley	plastid	84.78	77.65
HORVU1Hr1G038680.8	Barley	mitochondrion	86.16	74.44
TraesCS4D01G305900.1	Wheat	golgi	84.6	74.32
GSMUA_Achr7P24090_001	Banana	cytosol	67.99	74.15
CDY59049	Canola	mitochondrion	27.85	73.85
GSMUA_Achr10P...	Banana	cytosol	15.74	65.94
Bra021836.1-P	Field mustard	cytosol	50.87	65.77
CDY66712	Canola	mitochondrion	64.19	61.53
CDY37741	Canola	mitochondrion	63.15	59.74
TraesCS4B01G266200.1	Wheat	cytosol	38.93	54.22
GSMUA_Achr3P27620_001	Banana	plastid	45.85	43.3
GSMUA_Achr9P23240_001	Banana	plastid	45.85	43.3
GSMUA_Achr11P...	Banana	plastid	43.25	42.66
GSMUA_AchrUn_...	Banana	plastid	42.39	42.46
GSMUA_Achr9P18480_001	Banana	plastid	39.79	38.92
GSMUA_Achr11P...	Banana	plastid	45.85	38.07
GSMUA_Achr8P14600_001	Banana	plastid	16.44	36.12
HORVU4Hr1G071510.2	Barley	cytosol	41.7	33.85
GSMUA_Achr10P...	Banana	cytosol	39.45	18.6

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr1G11160_001	EnsemblPlants:GSMUA_Achr1P11160_001	EnsemblPlants:GSMUA_Achr1T11160_001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0RYX5	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000296C239	SEG:seg	:

Description

Chaperonin CPN60-2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G11160_001]

Coordinates

chr1:-:8528645..8534552

Molecular Weight (calculated)

61565.9 Da

IEP (calculated)

5.201

GRAVY (calculated)

-0.019

Length

578 amino acids

Sequence
(BLAST)

001: MYRAMASLAS RARVMEFCLV LQIGSRVGWS RNYAAKDIRF GVEARALMLK GVEELADAVK VTMGPKGRNV VLEQSFGAPK VTKDGVTVAK SIEFKDRIKN
101: MGASLVKQVA NATNDVAGDG TTCATILTKA IFAEGCKSVA AGMNAMDLRR GISMAVDAVV TNLKSRARMI STSEEIAQVG TISANGEREI GELIAKAMEK
201: VGKEGVITVA DGKTLDNELE VVEGMKFDRG YISPYFITDP KNQKCELEDP LILIHEKKIS SINAVVKVLE LSLKRQRPLL IVAEDIESDA LATLILNKLR
301: AGIKVCAVKA PGFGENRKAN LQDLAILTGG SLITEELGLN LEKVELDMLG TCKKVTISKD NTVILDGSGE KKAIEERCDQ IRSAIELSTS DYDKEKQQER
401: LAKLSGGVAV LKIGGASEAE VGEKKDRVTD ALNATKAAVE EGIVPGGGVA LLYASKELDK LQTANFDQKI GVQIIQNALK TPVHTIASNA GVEGAVVVGK
501: LLEQDELDLG YDAAKGEYVD MVKAGIIDPL KVIRTALVDA ASVSSLMTTT ESVIVELPKN EDAPAMGAGM GGMGGMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.