CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79518	Canola	cytosol	39.31	79.21
CDY59050	Canola	cytosol	63.88	76.92
Os03t0143400-01	Rice	mitochondrion	89.68	63.26
TraesCS4B01G307700.1	Wheat	mitochondrion	88.7	62.67
EER94121	Sorghum	mitochondrion	88.7	62.56
TraesCS4A01G409100.1	Wheat	mitochondrion	88.45	62.5
CDX93002	Canola	mitochondrion	83.05	61.45
VIT_05s0051g00340.t01	Wine grape	mitochondrion	83.78	59.3
GSMUA_Achr1P11160_001	Banana	mitochondrion	83.29	58.65
GSMUA_Achr10P...	Banana	mitochondrion	82.8	58.61
Bra001934.1-P	Field mustard	mitochondrion	83.05	58.58
CDX94835	Canola	mitochondrion	82.8	58.41
AT3G23990.1	Thale cress	mitochondrion	82.56	58.23
Solyc05g053470.2.1	Tomato	plastid	81.82	58.12
KRG92192	Soybean	mitochondrion	81.82	57.91
KRH34594	Soybean	mitochondrion	82.06	57.89
KRH33513	Soybean	mitochondrion	81.57	57.74
HORVU4Hr1G078820.3	Barley	plastid	89.19	57.53
PGSC0003DMT400069855	Potato	mitochondrion	80.84	57.42
KRG90277	Soybean	mitochondrion	81.08	57.39
PGSC0003DMT400030265	Potato	mitochondrion	80.84	57.22
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	80.59	56.65
AT2G33210.1	Thale cress	mitochondrion	80.34	55.9
CDX84697	Canola	mitochondrion	76.66	55.42
GSMUA_Achr10P...	Banana	cytosol	18.67	55.07
TraesCS4D01G305900.1	Wheat	golgi	88.7	54.86
Bra022931.1-P	Field mustard	mitochondrion	74.69	54.58
CDY17152	Canola	mitochondrion	76.66	54.36
CDY19471	Canola	mitochondrion	79.12	54.3
Bra005514.1-P	Field mustard	mitochondrion	74.45	54.2
TraesCS4B01G266200.1	Wheat	cytosol	53.32	52.29
EES19881	Sorghum	mitochondrion	67.57	47.33
Bra021836.1-P	Field mustard	cytosol	48.16	43.85
CDY66712	Canola	mitochondrion	62.41	42.12
CDY37741	Canola	mitochondrion	61.92	41.24
CDY72107	Canola	mitochondrion	26.78	35.5
EER89076	Sorghum	plastid	44.96	31.61
KXG29249	Sorghum	plastid	45.95	30.96
EER90466	Sorghum	plastid	43.0	30.17
EES19317	Sorghum	plastid	41.03	28.94
EER96340	Sorghum	plastid	40.05	27.86
HORVU4Hr1G071510.2	Barley	cytosol	48.65	27.81
CDY59049	Canola	mitochondrion	14.25	26.61

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1B6QQK5	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KXG40202	ProteinID:KXG40202	ProteinID:KXG40202.1	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	EnsemblPlantsGene:SORBI_3001G507500	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI00081AC995	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:77527985..77533498

Molecular Weight (calculated)

43389.2 Da

IEP (calculated)

4.582

GRAVY (calculated)

-0.103

Length

407 amino acids

Sequence
(BLAST)

001: MISTSEEIAQ VGTISANGER EIGELIAKAM EKVGKEGVIT IADGNTLYNE LEVVEGMKLE KGYISPYFIT DQKNQKCELN DPLILIHDKR VSNAHSVAKV
101: MELAMKKQKP LLIVAEDVEG EALGTLILNK LRGGVKVCAV KAPGFGGSRK TNLQDLAILT GGEVITEELG MNLENFEPQM FGTCKKVTIS KDDTVILDGA
201: GDKKAIEERA EHLRSAIEQS TSDYDKEKLQ ERLAKLSGGV AVLKIGGASE VEVNEKKDRV TDALNATKAA VEEGIVPGGG VALLYASKDL DTLETANFDQ
301: KIGVQIIQNA LKTPVHTIAS NAGVEGAVIV GKLLEQENTD LGYDAAKGEY VDMVKAGIID PLKVIRTALL DAASVSSLLT TTESVIVEIP KEVSSASATG
401: SMNGMEY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.