Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 83.01 | 82.48 |
| TraesCS7B01G340500.1 | Wheat | mitochondrion | 83.01 | 82.22 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 82.05 | 81.79 |
| HORVU7Hr1G100520.1 | Barley | cytosol, mitochondrion | 80.13 | 81.43 |
| TraesCS7B01G340700.1 | Wheat | mitochondrion | 81.41 | 81.41 |
| HORVU7Hr1G100540.2 | Barley | mitochondrion | 75.32 | 77.3 |
| TraesCS3B01G484600.1 | Wheat | cytosol | 65.71 | 74.55 |
| TraesCS4B01G019600.1 | Wheat | mitochondrion | 70.83 | 71.29 |
| TraesCS6B01G149100.1 | Wheat | nucleus | 45.19 | 53.61 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 44.23 | 41.82 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 30.77 | 41.74 |
| EER91098 | Sorghum | nucleus | 45.51 | 40.0 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 24.04 | 39.89 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 30.13 | 39.0 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 30.45 | 38.46 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 29.49 | 37.7 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 34.29 | 37.41 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 35.26 | 36.91 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 34.29 | 33.33 |
| CDX94520 | Canola | cytosol | 25.0 | 33.33 |
| CDY07541 | Canola | cytosol | 25.0 | 33.33 |
| CDY09318 | Canola | cytosol | 25.0 | 33.33 |
| CDY21311 | Canola | cytosol | 25.0 | 33.33 |
| Zm00001d033419_P001 | Maize | plastid | 29.81 | 33.21 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 32.69 | 33.01 |
| Bra035092.1-P | Field mustard | nucleus | 33.33 | 32.91 |
| CDX87407 | Canola | nucleus | 33.33 | 32.91 |
| KRH43767 | Soybean | nucleus | 26.28 | 32.41 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 31.09 | 32.01 |
| PGSC0003DMT400062617 | Potato | nucleus | 30.77 | 32.0 |
| CDX88507 | Canola | nucleus | 30.13 | 31.54 |
| Solyc02g031710.2.1 | Tomato | nucleus | 31.09 | 31.29 |
| AT4G19700.1 | Thale cress | cytosol | 30.13 | 30.92 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 31.41 | 30.62 |
| KRG89416 | Soybean | nucleus | 30.77 | 30.57 |
| KRH11729 | Soybean | nucleus | 30.45 | 30.35 |
| KRH36722 | Soybean | nucleus | 30.13 | 30.32 |
| AT5G45100.1 | Thale cress | cytosol | 28.53 | 30.27 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 28.53 | 30.07 |
| CDY26402 | Canola | cytosol | 28.53 | 30.07 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 31.09 | 30.03 |
| CDY01615 | Canola | cytosol | 28.85 | 29.51 |
| Bra012532.1-P | Field mustard | nucleus | 28.85 | 29.41 |
| CDY71607 | Canola | cytosol | 28.85 | 29.41 |
| AT3G12920.1 | Thale cress | nucleus | 30.77 | 28.66 |
| CDX79294 | Canola | nucleus | 27.88 | 28.62 |
| CDY71192 | Canola | cytosol | 25.64 | 28.57 |
| Bra013423.1-P | Field mustard | nucleus | 26.92 | 28.38 |
| CDY51918 | Canola | cytosol | 25.96 | 28.22 |
| AT1G79110.1 | Thale cress | nucleus | 32.37 | 28.21 |
| KRH13682 | Soybean | nucleus | 30.45 | 28.19 |
| CDY43390 | Canola | cytosol | 29.17 | 28.0 |
| Bra039354.1-P | Field mustard | cytosol | 29.17 | 28.0 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 24.68 | 27.6 |
| CDY13070 | Canola | cytosol | 24.68 | 27.6 |
| Bra034718.1-P | Field mustard | nucleus | 29.81 | 27.6 |
| CDY24237 | Canola | nucleus | 28.53 | 27.47 |
| CDY64561 | Canola | nucleus | 29.49 | 27.06 |
| Bra001477.1-P | Field mustard | nucleus | 29.49 | 27.06 |
| CDY18062 | Canola | cytosol | 24.36 | 26.95 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 24.36 | 26.95 |
| CDX82568 | Canola | nucleus | 29.17 | 26.76 |
| CDY46345 | Canola | cytosol | 24.04 | 26.6 |
| Solyc02g069180.2.1 | Tomato | plastid | 24.04 | 26.5 |
| TraesCS2B01G306500.1 | Wheat | cytosol | 25.0 | 24.07 |
| TraesCS2B01G306600.1 | Wheat | cytosol | 24.68 | 23.84 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 22.76 | 21.78 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 22.44 | 20.71 |
| CDY23552 | Canola | cytosol | 12.82 | 18.43 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 18.59 | 16.62 |
| TraesCS4B01G215100.1 | Wheat | plastid | 16.35 | 15.04 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G340600.1 | EnsemblPlantsGene:TraesCS7B01G340600 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF12 | PFAM:PF13920 | PFscan:PS50089 |
| PIRSF:PIRSF036836 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:595080572..595081594
Molecular Weight (calculated)
33265.7 Da
IEP (calculated)
7.002
GRAVY (calculated)
-0.264
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDLQRLRH KLLTTGGHHQ LASAAAMPAS GPCYGAAVPS QRGHQPYADL FTLPPPPPMS SSAPYQCSEF LAMAAADLAK KGVSPAGAQE MITNKRKRDE
101: RSSVLGAADV LPAHAQQEAI AVDCILLKHA KQMWTTLAEQ GQSHTKRIVS AVEARAAKRL KAKDEEIERI RTMNWALDER LRNLLMEAQM WRDVAQSHEA
201: TANVLRGDLQ RVLDAQAVRG SGSGDGQEDD AESCCWGENQ VPLGAEEEVG TPVVEERPAT GTRMCKACHD GAAVVLLLPC RHLSVCAPCA AAAQACPACG
301: SAKNGSVCVN FS
101: RSSVLGAADV LPAHAQQEAI AVDCILLKHA KQMWTTLAEQ GQSHTKRIVS AVEARAAKRL KAKDEEIERI RTMNWALDER LRNLLMEAQM WRDVAQSHEA
201: TANVLRGDLQ RVLDAQAVRG SGSGDGQEDD AESCCWGENQ VPLGAEEEVG TPVVEERPAT GTRMCKACHD GAAVVLLLPC RHLSVCAPCA AAAQACPACG
301: SAKNGSVCVN FS
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Arabidopsis Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.